© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g4338.t1 |
| Gene name | |
| Location | scaffold_026:232832..234043 |
| Strand | + |
| Gene length (bp) | 1211 |
| Transcript length (bp) | 975 |
| Coding sequence length (bp) | 975 |
| Protein length (aa) | 325 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 2.2E-17 | 22 | 76 |
| PF04193 | PQ-loop | PQ loop repeat | 1.8E-20 | 229 | 283 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 45 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 54 | 76 | 22 |
| 3 | 80 | 102 | 22 |
| 4 | 186 | 208 | 22 |
| 5 | 223 | 243 | 20 |
| 6 | 256 | 278 | 22 |
| 7 | 293 | 315 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g4338.t1 MATLWTATNADSVPLTPREAASGLLGSISLTCWIFLLVPQLIENYRNGNAEAISLLFLFVWFLGDITNLIGGAWA GLVPVIVAIAVYFCIADGVLIGQCLYYKARNSRQPRPRRRTSSSVFEPSTPDPTTPLLGRRFSDAYAHTQTGEIV DNPRNSTRRAESSSDDMLAKIVEENDVGRKAWVKNFSSVLGICVIGMAGWTVAWRTGVWKPAPVEEGLGGVDMAP GAMVLGYISAVCYLGARLPQIYKNYCDKSCEGLSLLFFILSLMGNLTYGAGIICHSTEKNYIVTNVPWLIGSLGT MVEDVTIFVQFRLYATRDQDTAAV* |
| Coding | >Ani_SJS72_1|g4338.t1 ATGGCGACTCTCTGGACAGCTACCAATGCTGACTCTGTCCCTCTCACTCCTCGCGAAGCAGCCTCCGGCTTGCTG GGTTCAATATCACTCACCTGCTGGATCTTTCTCCTCGTCCCCCAACTAATCGAAAATTACCGCAACGGCAACGCC GAAGCCATCTCCCTCCTCTTCCTCTTCGTCTGGTTCCTTGGCGACATCACAAACCTAATCGGAGGCGCCTGGGCA GGTCTCGTGCCCGTGATCGTCGCCATCGCCGTGTACTTCTGTATCGCGGACGGGGTTCTCATCGGACAATGTCTC TACTACAAGGCGCGGAACTCCCGACAGCCGCGCCCCCGCCGCCGCACCTCCTCTTCCGTATTTGAGCCAAGCACG CCCGATCCGACGACGCCGCTTCTGGGCCGGCGGTTCAGCGATGCGTATGCGCATACGCAGACTGGTGAGATTGTG GACAACCCTAGGAACTCGACGCGCCGCGCGGAAAGCAGCAGTGATGACATGCTGGCTAAGATTGTCGAGGAGAAT GATGTGGGGCGCAAGGCGTGGGTGAAGAATTTTAGCAGTGTGCTGGGCATCTGCGTCATTGGGATGGCGGGGTGG ACGGTTGCGTGGCGGACGGGCGTGTGGAAGCCTGCGCCTGTGGAGGAGGGGTTGGGAGGCGTGGATATGGCGCCT GGGGCAATGGTGTTGGGGTATATTAGTGCGGTTTGTTATCTTGGGGCGCGACTTCCGCAGATCTACAAGAATTAC TGCGATAAGTCGTGTGAGGGACTCTCGCTACTATTCTTCATCCTCTCCCTTATGGGAAACCTCACCTACGGCGCA GGCATCATCTGTCACTCCACAGAAAAGAACTATATCGTGACAAATGTCCCATGGCTGATTGGTTCGCTCGGCACC ATGGTCGAGGACGTGACTATCTTCGTGCAGTTCCGACTCTACGCGACACGCGACCAGGACACGGCTGCTGTTTAG |
| Transcript | >Ani_SJS72_1|g4338.t1 ATGGCGACTCTCTGGACAGCTACCAATGCTGACTCTGTCCCTCTCACTCCTCGCGAAGCAGCCTCCGGCTTGCTG GGTTCAATATCACTCACCTGCTGGATCTTTCTCCTCGTCCCCCAACTAATCGAAAATTACCGCAACGGCAACGCC GAAGCCATCTCCCTCCTCTTCCTCTTCGTCTGGTTCCTTGGCGACATCACAAACCTAATCGGAGGCGCCTGGGCA GGTCTCGTGCCCGTGATCGTCGCCATCGCCGTGTACTTCTGTATCGCGGACGGGGTTCTCATCGGACAATGTCTC TACTACAAGGCGCGGAACTCCCGACAGCCGCGCCCCCGCCGCCGCACCTCCTCTTCCGTATTTGAGCCAAGCACG CCCGATCCGACGACGCCGCTTCTGGGCCGGCGGTTCAGCGATGCGTATGCGCATACGCAGACTGGTGAGATTGTG GACAACCCTAGGAACTCGACGCGCCGCGCGGAAAGCAGCAGTGATGACATGCTGGCTAAGATTGTCGAGGAGAAT GATGTGGGGCGCAAGGCGTGGGTGAAGAATTTTAGCAGTGTGCTGGGCATCTGCGTCATTGGGATGGCGGGGTGG ACGGTTGCGTGGCGGACGGGCGTGTGGAAGCCTGCGCCTGTGGAGGAGGGGTTGGGAGGCGTGGATATGGCGCCT GGGGCAATGGTGTTGGGGTATATTAGTGCGGTTTGTTATCTTGGGGCGCGACTTCCGCAGATCTACAAGAATTAC TGCGATAAGTCGTGTGAGGGACTCTCGCTACTATTCTTCATCCTCTCCCTTATGGGAAACCTCACCTACGGCGCA GGCATCATCTGTCACTCCACAGAAAAGAACTATATCGTGACAAATGTCCCATGGCTGATTGGTTCGCTCGGCACC ATGGTCGAGGACGTGACTATCTTCGTGCAGTTCCGACTCTACGCGACACGCGACCAGGACACGGCTGCTGTTTAG |
| Gene | >Ani_SJS72_1|g4338.t1 ATGGCGACTCTCTGGACAGCTACCAATGCTGACTCTGTCCCTCTCACTCCTCGCGAAGCAGCCTCCGGCTTGCTG GGTTCAATATCACTCACCTGCTGGATCTTTCTCCTCGTAAGCCCTCTAATCCTCTATTCCCTCCCCATACTACAA GCCATACTAACAAGCTTCGAGGTCCCCCAACTAATCGAAAATTACCGCAACGGCAACGCCGAAGCCATCTCCCTC CTCTTCCTCTTCGTCTGGTTCCTTGGCGACATCACAAACCTAATCGGAGGCGCCTGGGCAGGTCTCGTGCCCGTG ATCGTCGCCATCGCCGTGTACTTCTGTATCGCGGACGGGGTTCTCATCGGACAATGTCTCTACTACAAGGCGCGG AACTCCCGACAGCCGCGCCCCCGCCGCCGCACCTCCTCTTCCGTATTTGAGCCAAGCACGCCCGATCCGACGACG CCGCTTCTGGGCCGGCGGTTCAGCGATGCGTATGCGCATACGCAGACTGGTGAGATTGTGGACAACCCTAGGAAC TCGACGCGCCGCGCGGAAAGCAGCAGTGATGACATGCTGGCTAAGATTGTCGAGGAGAATGATGTGGGGCGCAAG GCGTGGGTGAAGAATTTTAGCAGTGTGCTGGGCATCTGCGTCATTGGGATGGCGGGGTGGACGGTTGCGTGGCGG ACGGGCGTGTGGAAGCCTGCGCCTGTGGAGGAGGGGTTGGGAGGCGTGGATATGGCGCCTGGGGCAATGGTGTTG GGGTATATTAGTGCGGTTTGTTATCTTGGGTATGTTTACTTTTCTACGCTTGGTTGGGGAGAGTGATTGTGCTAA TGGAATAATAGGGCGCGACTTCCGCAGATCTACAAGAATTACTGCGATAAGTCGTGTGAGGGTATGTACATCCCT TCCTCTCTAATTGATTGTTGTGATGAGCTAACAGATATGGATATAGGACTCTCGCTACTATTCTTCATCCTCTCC CTTATGGGAAACCTCACCTACGGCGCAGGCGTAAGTCTCACTTTCACTCCTCGTGACTCACATAAACCAGACTAA CTGATCTTATACAGATCATCTGTCACTCCACAGAAAAGAACTATATCGTGACAAATGTCCCATGGCTGATTGGTT CGCTCGGCACCATGGTCGAGGACGTGACTATCTTCGTGCAGTTCCGACTCTACGCGACACGCGACCAGGACACGG CTGCTGTTTAG |