© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g4267.t1 |
| Gene name | |
| Location | scaffold_026:27289..28134 |
| Strand | + |
| Gene length (bp) | 845 |
| Transcript length (bp) | 708 |
| Coding sequence length (bp) | 708 |
| Protein length (aa) | 236 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04148 | Erv26 | Transmembrane adaptor Erv26 | 2.4E-93 | 1 | 215 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0097020 | COPII receptor activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Yes |
| GO:0051649 | establishment of localization in cell | No |
| GO:0051179 | localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| GO:0016192 | vesicle-mediated transport | No |
| GO:0038024 | cargo receptor activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0048193 | Golgi vesicle transport | No |
| GO:0046907 | intracellular transport | No |
| GO:0051641 | cellular localization | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 44 | 62 | 18 |
| 3 | 95 | 112 | 17 |
| 4 | 145 | 167 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g4267.t1 MWILPLVGYLGVIVGFAFLTLAIASGLYYLSELVEEHTVLARRLLYRLIYSIIAVQILLYVFDRFPFSLTALSIG SHIVYASNLRRFPIVKLSDPLFILSCGLVGLNHWLWFRHFSQPLPSSRGATSWRQPYQINVEDMPTFTEVASYFG LCVWLVPFALFVSLSAGDNVLPTMGSEYATGDRVPTSGFTPGTFSSDGKSKNKGMAKALVDGVRDWVKDNGELMG FWKGERAKGF* |
| Coding | >Ani_SJS72_1|g4267.t1 ATGTGGATCCTACCCTTGGTAGGGTATTTGGGGGTCATTGTCGGGTTCGCTTTCCTTACCTTAGCGATAGCCTCC GGCCTTTACTACCTCTCGGAGCTTGTGGAGGAGCATACAGTTCTTGCCCGTCGGCTGTTGTACCGGCTGATATAC AGCATCATCGCCGTTCAGATCCTCCTCTACGTATTTGACCGATTTCCTTTCTCCTTGACCGCCCTCAGCATCGGC TCGCATATCGTATATGCCAGCAATCTCCGCCGGTTCCCCATAGTCAAGTTGTCCGACCCTCTCTTCATCCTGTCA TGTGGGCTCGTCGGTTTGAATCATTGGCTCTGGTTTCGCCATTTTTCACAGCCATTACCTTCATCGCGCGGCGCC ACAAGCTGGCGCCAGCCGTATCAGATTAATGTGGAGGATATGCCCACCTTCACGGAGGTTGCGTCTTACTTTGGA CTCTGTGTCTGGCTGGTACCATTTGCGCTCTTCGTCAGCCTCAGCGCGGGCGATAATGTCTTGCCTACTATGGGC TCCGAGTATGCCACAGGTGACCGTGTGCCTACTTCGGGGTTTACCCCGGGTACGTTTTCGTCCGATGGCAAGTCC AAGAACAAGGGAATGGCCAAGGCCCTGGTGGATGGTGTGCGGGACTGGGTTAAGGATAACGGGGAATTGATGGGT TTCTGGAAAGGTGAACGGGCAAAAGGCTTCTAG |
| Transcript | >Ani_SJS72_1|g4267.t1 ATGTGGATCCTACCCTTGGTAGGGTATTTGGGGGTCATTGTCGGGTTCGCTTTCCTTACCTTAGCGATAGCCTCC GGCCTTTACTACCTCTCGGAGCTTGTGGAGGAGCATACAGTTCTTGCCCGTCGGCTGTTGTACCGGCTGATATAC AGCATCATCGCCGTTCAGATCCTCCTCTACGTATTTGACCGATTTCCTTTCTCCTTGACCGCCCTCAGCATCGGC TCGCATATCGTATATGCCAGCAATCTCCGCCGGTTCCCCATAGTCAAGTTGTCCGACCCTCTCTTCATCCTGTCA TGTGGGCTCGTCGGTTTGAATCATTGGCTCTGGTTTCGCCATTTTTCACAGCCATTACCTTCATCGCGCGGCGCC ACAAGCTGGCGCCAGCCGTATCAGATTAATGTGGAGGATATGCCCACCTTCACGGAGGTTGCGTCTTACTTTGGA CTCTGTGTCTGGCTGGTACCATTTGCGCTCTTCGTCAGCCTCAGCGCGGGCGATAATGTCTTGCCTACTATGGGC TCCGAGTATGCCACAGGTGACCGTGTGCCTACTTCGGGGTTTACCCCGGGTACGTTTTCGTCCGATGGCAAGTCC AAGAACAAGGGAATGGCCAAGGCCCTGGTGGATGGTGTGCGGGACTGGGTTAAGGATAACGGGGAATTGATGGGT TTCTGGAAAGGTGAACGGGCAAAAGGCTTCTAG |
| Gene | >Ani_SJS72_1|g4267.t1 ATGTGGATCCTACCCTTGGTAGGGTATTTGGGGGTCATTGTCGGGTTCGCTTTCCTTACCTTAGCGATAGGTATG ATATGCCCGCAATGCGCGCGATGATGATGACGACGACTGGTCTTGCTCTCGTCACCATAGACAATAGGACGAGAT GCCAAGCTCACATGACTTGTGATACTATCTGTATTCATCAGGCTGACCTCTTTCTAGCCTCCGGCCTTTACTACC TCTCGGAGCTTGTGGAGGAGCATACAGTTCTTGCCCGTCGGCTGTTGTACCGGCTGATATACAGCATCATCGCCG TTCAGATCCTCCTCTACGTATTTGACCGATTTCCTTTCTCCTTGACCGCCCTCAGCATCGGCTCGCATATCGTAT ATGCCAGCAATCTCCGCCGGTTCCCCATAGTCAAGTTGTCCGACCCTCTCTTCATCCTGTCATGTGGGCTCGTCG GTTTGAATCATTGGCTCTGGTTTCGCCATTTTTCACAGCCATTACCTTCATCGCGCGGCGCCACAAGCTGGCGCC AGCCGTATCAGATTAATGTGGAGGATATGCCCACCTTCACGGAGGTTGCGTCTTACTTTGGACTCTGTGTCTGGC TGGTACCATTTGCGCTCTTCGTCAGCCTCAGCGCGGGCGATAATGTCTTGCCTACTATGGGCTCCGAGTATGCCA CAGGTGACCGTGTGCCTACTTCGGGGTTTACCCCGGGTACGTTTTCGTCCGATGGCAAGTCCAAGAACAAGGGAA TGGCCAAGGCCCTGGTGGATGGTGTGCGGGACTGGGTTAAGGATAACGGGGAATTGATGGGTTTCTGGAAAGGTG AACGGGCAAAAGGCTTCTAG |