© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g4130.t1 |
| Gene name | |
| Location | scaffold_024:313331..314231 |
| Strand | + |
| Gene length (bp) | 900 |
| Transcript length (bp) | 828 |
| Coding sequence length (bp) | 828 |
| Protein length (aa) | 276 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01822 | WSC | WSC domain | 3.6E-13 | 27 | 102 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
| 2 | 252 | 274 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g4130.t1 MPKASATKIISLSIFSLLTTASAYTIVGCYSSPGQLTSAGTFQFQSEGYCQQICTKQNKPIFALYNGDECYCGDA LPPSTAKVSSTQCQTPCSGFPSDPCGGTNAWLINNSTTISQPTTDNNIVTELKRESTDNVENGIVIAPESDDSDS SSGNSNSPETMTVNPTMVETGIPIAPSSGADGGAAKSTIPSVILTAPSMTGVTVPATGAAAASSMVVAASSASAS ATAAASGAASSGSAAASPSTSAGAAAAVAGAPAGGMIGGVVMAAIVALGL* |
| Coding | >Ani_SJS72_1|g4130.t1 ATGCCTAAAGCTAGTGCCACCAAGATCATTTCCCTTTCTATCTTCTCCCTTCTCACCACCGCTTCTGCCTACACA ATCGTAGGCTGCTATAGCAGTCCCGGCCAGCTAACCTCAGCGGGCACCTTTCAATTCCAATCCGAAGGCTACTGC CAGCAAATTTGCACGAAGCAAAACAAGCCCATCTTCGCCCTCTACAACGGCGACGAATGCTACTGCGGCGATGCA TTGCCCCCTTCAACAGCCAAGGTCTCTTCCACACAATGTCAAACCCCTTGCTCCGGATTTCCATCTGATCCTTGC GGCGGCACCAATGCATGGCTAATCAACAACTCCACCACCATCTCGCAGCCCACAACCGACAACAACATCGTCACA GAACTGAAACGTGAATCCACAGACAATGTCGAGAATGGCATCGTGATTGCCCCGGAGTCCGATGACTCCGACTCA TCCTCAGGCAACTCCAACTCTCCTGAGACCATGACAGTCAATCCTACCATGGTGGAGACCGGCATCCCTATCGCC CCCAGCTCCGGTGCAGACGGAGGCGCAGCTAAATCTACCATCCCGAGTGTAATTCTTACGGCGCCGTCCATGACG GGCGTCACTGTTCCGGCTACTGGTGCTGCTGCGGCGTCGTCTATGGTTGTTGCGGCGTCGTCTGCTTCGGCGTCT GCCACGGCTGCTGCATCCGGAGCGGCGAGCAGTGGTTCGGCCGCCGCGAGCCCATCAACTAGTGCGGGTGCCGCT GCTGCTGTCGCTGGTGCTCCTGCTGGTGGGATGATCGGGGGTGTGGTTATGGCGGCAATTGTTGCGCTCGGACTG TAG |
| Transcript | >Ani_SJS72_1|g4130.t1 ATGCCTAAAGCTAGTGCCACCAAGATCATTTCCCTTTCTATCTTCTCCCTTCTCACCACCGCTTCTGCCTACACA ATCGTAGGCTGCTATAGCAGTCCCGGCCAGCTAACCTCAGCGGGCACCTTTCAATTCCAATCCGAAGGCTACTGC CAGCAAATTTGCACGAAGCAAAACAAGCCCATCTTCGCCCTCTACAACGGCGACGAATGCTACTGCGGCGATGCA TTGCCCCCTTCAACAGCCAAGGTCTCTTCCACACAATGTCAAACCCCTTGCTCCGGATTTCCATCTGATCCTTGC GGCGGCACCAATGCATGGCTAATCAACAACTCCACCACCATCTCGCAGCCCACAACCGACAACAACATCGTCACA GAACTGAAACGTGAATCCACAGACAATGTCGAGAATGGCATCGTGATTGCCCCGGAGTCCGATGACTCCGACTCA TCCTCAGGCAACTCCAACTCTCCTGAGACCATGACAGTCAATCCTACCATGGTGGAGACCGGCATCCCTATCGCC CCCAGCTCCGGTGCAGACGGAGGCGCAGCTAAATCTACCATCCCGAGTGTAATTCTTACGGCGCCGTCCATGACG GGCGTCACTGTTCCGGCTACTGGTGCTGCTGCGGCGTCGTCTATGGTTGTTGCGGCGTCGTCTGCTTCGGCGTCT GCCACGGCTGCTGCATCCGGAGCGGCGAGCAGTGGTTCGGCCGCCGCGAGCCCATCAACTAGTGCGGGTGCCGCT GCTGCTGTCGCTGGTGCTCCTGCTGGTGGGATGATCGGGGGTGTGGTTATGGCGGCAATTGTTGCGCTCGGACTG TAG |
| Gene | >Ani_SJS72_1|g4130.t1 ATGCCTAAAGCTAGTGCCACCAAGATCATTTCCCTTTCTATCTTCTCCCTTCTCACCACCGCTTCTGCCTACACA ATCGTAGGCTGCTATAGCAGTCCCGGCCAGCTAACCTCAGCGGGCACCTTTCAATTCCAATCCGAAGGCTACTGC CAGCAAATTTGCACGAAGCAAAACAAGCCCATCTTCGCCCTCTACAACGGCGACGAATGCTACTGCGGCGATGCA TTGCCCCCTTCAACAGCCAAGGTCTCTTCCACACAATGTCAAACCCCTTGCTCCGGATTTCCATCTGATCCTTGT ACGTATACTCCCATAAGGCCCTCGTTAGTCAGCCCAACAGGACCCCATACTAATGCATAAATCACTATAGGCGGC GGCACCAATGCATGGCTAATCAACAACTCCACCACCATCTCGCAGCCCACAACCGACAACAACATCGTCACAGAA CTGAAACGTGAATCCACAGACAATGTCGAGAATGGCATCGTGATTGCCCCGGAGTCCGATGACTCCGACTCATCC TCAGGCAACTCCAACTCTCCTGAGACCATGACAGTCAATCCTACCATGGTGGAGACCGGCATCCCTATCGCCCCC AGCTCCGGTGCAGACGGAGGCGCAGCTAAATCTACCATCCCGAGTGTAATTCTTACGGCGCCGTCCATGACGGGC GTCACTGTTCCGGCTACTGGTGCTGCTGCGGCGTCGTCTATGGTTGTTGCGGCGTCGTCTGCTTCGGCGTCTGCC ACGGCTGCTGCATCCGGAGCGGCGAGCAGTGGTTCGGCCGCCGCGAGCCCATCAACTAGTGCGGGTGCCGCTGCT GCTGTCGCTGGTGCTCCTGCTGGTGGGATGATCGGGGGTGTGGTTATGGCGGCAATTGTTGCGCTCGGACTGTAG |