© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g3932.t1 |
| Gene name | |
| Location | scaffold_023:79458..80927 |
| Strand | + |
| Gene length (bp) | 1469 |
| Transcript length (bp) | 1353 |
| Coding sequence length (bp) | 1353 |
| Protein length (aa) | 451 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10104 | Brr6_like_C_C | Di-sulfide bridge nucleocytoplasmic transport domain | 1.1E-44 | 230 | 359 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0031965 | nuclear membrane | Yes |
| GO:0055088 | lipid homeostasis | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0065007 | biological regulation | No |
| GO:0005575 | cellular_component | No |
| GO:0016020 | membrane | No |
| GO:0042592 | homeostatic process | No |
| GO:0048878 | chemical homeostasis | No |
| GO:0031090 | organelle membrane | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 234 | 256 | 22 |
| 2 | 338 | 357 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g3932.t1 MDKRTAESPMDFEWQTRAPGDVTSPFYQLSMQHDNQKKRPHSIFDSPEKKSMPALREPNSQPFLFSQPKPQQPPS TPKPFFNQSAFMTPRKFDVDFSSGAENMSSPEHADNEDTPEQPKAHRNSLFSMYGRFAPSPGRGEIPRVSHYSNA LARRVQKRRRRDKALDLQLRRDSDDESDRPSSTELKPTKQRQKPGQGQQETPQTGSRLTSFSDFFALLEAHPNVP SILSWWAQLVVNLSLFSLAVYVVFGFVSAIRAEFEQAAEEVSDTILAEMAACAKSYVDNRCAGGDRLPALESVCE NWERCMNRDPAKVGRAKVSAHTMAVIINSFIDPISWKAIMFFLATISTVTVVSNWSFRSFRNRLNQHDYSAPPSY SRQSSGQHPSLAPSQFPYQQNSMGYMGAPNHGATGFDKAEAPLMLEQAATKDFVSDRTRERGSRLRTPSPSKRMR * |
| Coding | >Ani_SJS72_1|g3932.t1 ATGGATAAACGAACGGCGGAGAGTCCGATGGACTTTGAATGGCAGACAAGGGCCCCAGGAGATGTGACCTCGCCC TTTTACCAGCTTAGCATGCAGCATGACAATCAGAAGAAACGCCCTCATAGCATTTTCGATTCACCCGAGAAGAAA TCGATGCCTGCTCTGCGAGAGCCCAACTCCCAGCCCTTCCTCTTCTCCCAGCCCAAGCCGCAGCAACCCCCCTCA ACCCCGAAGCCGTTCTTCAACCAGTCAGCATTCATGACGCCTCGCAAATTCGATGTCGACTTCTCATCCGGCGCC GAGAATATGTCATCTCCAGAACACGCGGACAACGAAGATACCCCCGAGCAACCGAAAGCCCACCGGAACTCGCTG TTCAGCATGTACGGACGGTTTGCGCCGAGCCCTGGCCGCGGCGAGATACCCCGGGTGAGCCACTACTCCAACGCG TTGGCACGCCGGGTGCAGAAGAGACGGCGGAGGGACAAGGCGCTGGACCTACAACTACGGAGAGACAGTGACGAC GAGAGTGACCGACCAAGCAGCACTGAGCTCAAGCCAACCAAGCAAAGACAGAAGCCGGGACAAGGCCAGCAGGAG ACGCCTCAAACGGGATCACGTCTGACATCATTCTCAGATTTCTTTGCCCTGCTGGAAGCACACCCGAATGTCCCT AGCATTCTTTCTTGGTGGGCGCAGTTGGTGGTGAACCTTTCGTTGTTCTCGCTTGCGGTATATGTGGTCTTTGGA TTTGTGTCAGCGATCCGGGCAGAATTCGAGCAGGCAGCCGAGGAGGTATCGGATACGATCCTGGCTGAAATGGCG GCATGCGCTAAGAGCTACGTCGACAATCGATGTGCGGGAGGAGATAGACTGCCGGCCTTGGAAAGTGTGTGTGAA AACTGGGAGCGATGCATGAACCGGGATCCAGCCAAGGTCGGGCGGGCTAAGGTGTCGGCACATACGATGGCTGTA ATCATCAACAGCTTTATCGACCCTATCAGCTGGAAGGCGATTATGTTTTTCCTTGCTACGATTTCGACCGTCACC GTTGTCAGCAACTGGTCCTTCCGTTCCTTCAGAAACCGTCTCAATCAACACGACTACTCTGCACCCCCTAGCTAT TCCCGACAATCGTCTGGGCAGCACCCGTCGCTTGCGCCGTCGCAATTCCCCTACCAGCAGAATTCGATGGGATAC ATGGGAGCGCCGAACCACGGGGCTACTGGGTTTGATAAAGCAGAGGCACCGCTCATGCTGGAGCAGGCCGCGACC AAGGACTTTGTGTCTGACCGGACCCGCGAGCGGGGCTCTCGTCTGCGTACGCCGAGTCCATCCAAGCGGATGAGG TAG |
| Transcript | >Ani_SJS72_1|g3932.t1 ATGGATAAACGAACGGCGGAGAGTCCGATGGACTTTGAATGGCAGACAAGGGCCCCAGGAGATGTGACCTCGCCC TTTTACCAGCTTAGCATGCAGCATGACAATCAGAAGAAACGCCCTCATAGCATTTTCGATTCACCCGAGAAGAAA TCGATGCCTGCTCTGCGAGAGCCCAACTCCCAGCCCTTCCTCTTCTCCCAGCCCAAGCCGCAGCAACCCCCCTCA ACCCCGAAGCCGTTCTTCAACCAGTCAGCATTCATGACGCCTCGCAAATTCGATGTCGACTTCTCATCCGGCGCC GAGAATATGTCATCTCCAGAACACGCGGACAACGAAGATACCCCCGAGCAACCGAAAGCCCACCGGAACTCGCTG TTCAGCATGTACGGACGGTTTGCGCCGAGCCCTGGCCGCGGCGAGATACCCCGGGTGAGCCACTACTCCAACGCG TTGGCACGCCGGGTGCAGAAGAGACGGCGGAGGGACAAGGCGCTGGACCTACAACTACGGAGAGACAGTGACGAC GAGAGTGACCGACCAAGCAGCACTGAGCTCAAGCCAACCAAGCAAAGACAGAAGCCGGGACAAGGCCAGCAGGAG ACGCCTCAAACGGGATCACGTCTGACATCATTCTCAGATTTCTTTGCCCTGCTGGAAGCACACCCGAATGTCCCT AGCATTCTTTCTTGGTGGGCGCAGTTGGTGGTGAACCTTTCGTTGTTCTCGCTTGCGGTATATGTGGTCTTTGGA TTTGTGTCAGCGATCCGGGCAGAATTCGAGCAGGCAGCCGAGGAGGTATCGGATACGATCCTGGCTGAAATGGCG GCATGCGCTAAGAGCTACGTCGACAATCGATGTGCGGGAGGAGATAGACTGCCGGCCTTGGAAAGTGTGTGTGAA AACTGGGAGCGATGCATGAACCGGGATCCAGCCAAGGTCGGGCGGGCTAAGGTGTCGGCACATACGATGGCTGTA ATCATCAACAGCTTTATCGACCCTATCAGCTGGAAGGCGATTATGTTTTTCCTTGCTACGATTTCGACCGTCACC GTTGTCAGCAACTGGTCCTTCCGTTCCTTCAGAAACCGTCTCAATCAACACGACTACTCTGCACCCCCTAGCTAT TCCCGACAATCGTCTGGGCAGCACCCGTCGCTTGCGCCGTCGCAATTCCCCTACCAGCAGAATTCGATGGGATAC ATGGGAGCGCCGAACCACGGGGCTACTGGGTTTGATAAAGCAGAGGCACCGCTCATGCTGGAGCAGGCCGCGACC AAGGACTTTGTGTCTGACCGGACCCGCGAGCGGGGCTCTCGTCTGCGTACGCCGAGTCCATCCAAGCGGATGAGG TAG |
| Gene | >Ani_SJS72_1|g3932.t1 ATGGATAAACGAACGGCGGAGAGTCCGATGGACTTTGAATGGCAGACAAGGGCCCCAGGAGATGTGACCTCGCCC TTTTACCAGCTTAGCATGCAGCATGACAATCAGAAGAAACGTGGGTCTTGGATGCAGCTCTCTTGGAGGCAAACC TTTGTTTTTTTGGCGCCTAACAAGCTCTTCGACAGGCCCTCATAGCATTTTCGATTCACCCGAGAAGAAATCGAT GCCTGCTCTGCGAGAGCCCAACTCCCAGCCCTTCCTCTTCTCCCAGCCCAAGCCGCAGCAACCCCCCTCAACCCC GAAGCCGTTCTTCAACCAGTCAGCATTCATGACGCCTCGCAAATTCGATGTCGACTTCTCATCCGGCGCCGAGAA TATGTCATCTCCAGAACACGCGGACAACGAAGATACCCCCGAGCAACCGAAAGCCCACCGGAACTCGCTGTTCAG CATGTACGGACGGTTTGCGCCGAGCCCTGGCCGCGGCGAGATACCCCGGGTGAGCCACTACTCCAACGCGTTGGC ACGCCGGGTGCAGAAGAGACGGCGGAGGGACAAGGCGCTGGACCTACAACTACGGAGAGACAGTGACGACGAGAG TGACCGACCAAGCAGCACTGAGCTCAAGCCAACCAAGCAAAGACAGAAGCCGGGACAAGGCCAGCAGGAGACGCC TCAAACGGGATCACGTCTGACATCATTCTCAGATTTCTTTGCCCTGCTGGAAGCACACCCGAATGTCCCTAGCAT TCTTTCTTGGTGGGCGCAGTTGGTGGTGAACCTTTCGTTGTTCTCGCTTGCGGTATATGTGGTCTTTGGATTTGT GTCAGCGATCCGGGCAGAATTCGAGCAGGCAGCCGAGGAGGTATCGGATACGATCCTGGCTGAAATGGCGGCATG CGCTAAGAGCTACGTCGACAATCGATGTGCGGGAGGAGATAGACTGCCGGCCTTGGAAAGTGTGTGTGAAAACTG GGAGCGATGCATGAACCGGGATCCAGCCAAGGTCGGGCGGGCTAAGGTGTCGGCACATACGATGGCTGTAATCAT CAACAGCTTTATCGACCCTATCAGCTGGAAGGCGATTGTAGGTTCGCCATCCTCCAAAGCAAGTTATCGGCTAAT ATTTCCAGATGTTTTTCCTTGCTACGATTTCGACCGTCACCGTTGTCAGCAACTGGTCCTTCCGTTCCTTCAGAA ACCGTCTCAATCAACACGACTACTCTGCACCCCCTAGCTATTCCCGACAATCGTCTGGGCAGCACCCGTCGCTTG CGCCGTCGCAATTCCCCTACCAGCAGAATTCGATGGGATACATGGGAGCGCCGAACCACGGGGCTACTGGGTTTG ATAAAGCAGAGGCACCGCTCATGCTGGAGCAGGCCGCGACCAAGGACTTTGTGTCTGACCGGACCCGCGAGCGGG GCTCTCGTCTGCGTACGCCGAGTCCATCCAAGCGGATGAGGTAG |