Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS72_1|g3855.t1
Gene name
Locationscaffold_022:227883..228856
Strand+
Gene length (bp)973
Transcript length (bp)861
Coding sequence length (bp)861
Protein length (aa) 287

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04479 RTA1 RTA1 like protein 5.5E-70 44 254

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 15 0.5

Transmembrane Domains

Domain # Start End Length
1 10 32 22
2 39 61 22
3 76 98 22
4 118 140 22
5 150 172 22
6 197 214 17
7 229 251 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS72_1|g3855.t1
MAFTLYYYTPSAAAAGIFVVLFGISTVLHFLQLVRTRTWFMIPFFIGGILETIGYVGRLLSSLESPNYSTGSYAM
QSALILIAPAFLAASIYMTLGRIIRMVQAEQYSVFRLNWVTKIFVAGDVLSFLMQASGAGLMVSNSSDPSTGEHI
IIGGLFVQIIFFGFFIITALIFQMRLAKAPTGTSVDLSHIWRRHMNALYISSVLIFVRSIVRVVEYLQGYDGYLM
KHEVFIYVFDALLMFLAMEILQFIHPSQVNCYLGRGDRYSDKVIKTQKFMSVPVEMEVSSV*
Coding >Ani_SJS72_1|g3855.t1
ATGGCATTCACTCTCTACTACTACACCCCCTCTGCTGCGGCAGCAGGCATCTTTGTTGTTCTGTTCGGCATCAGC
ACTGTATTGCACTTTCTGCAGCTGGTTCGGACGCGAACGTGGTTCATGATCCCTTTCTTCATTGGAGGAATCTTG
GAAACAATCGGATATGTTGGCCGTCTGCTGTCATCGCTTGAAAGCCCCAACTACAGCACAGGCTCGTATGCCATG
CAAAGCGCCCTTATTCTGATCGCTCCCGCCTTCCTGGCTGCCAGTATTTACATGACCCTCGGTCGCATCATTCGA
ATGGTCCAAGCCGAACAGTACTCGGTGTTCAGGTTGAACTGGGTGACCAAGATCTTTGTTGCGGGCGACGTTCTT
TCCTTTCTGATGCAAGCCTCTGGCGCTGGTCTCATGGTCAGCAACTCTAGCGACCCATCCACGGGCGAGCACATT
ATTATCGGCGGTCTCTTTGTTCAGATTATCTTCTTCGGCTTCTTCATTATCACCGCGCTCATCTTCCAAATGCGA
CTAGCGAAGGCTCCCACCGGCACTTCCGTTGATTTATCGCACATCTGGCGTCGCCACATGAACGCTCTTTACATC
TCCAGTGTCCTGATCTTCGTCCGTTCCATTGTCCGTGTGGTGGAGTACCTGCAGGGATATGACGGCTATCTCATG
AAGCATGAGGTTTTCATTTATGTGTTTGATGCGTTGCTGATGTTCCTGGCGATGGAGATACTCCAATTCATCCAT
CCCAGCCAAGTCAACTGCTATCTGGGGCGTGGAGACCGTTATTCTGACAAGGTGATCAAGACGCAAAAGTTCATG
TCTGTGCCGGTGGAAATGGAGGTTTCGTCCGTTTGA
Transcript >Ani_SJS72_1|g3855.t1
ATGGCATTCACTCTCTACTACTACACCCCCTCTGCTGCGGCAGCAGGCATCTTTGTTGTTCTGTTCGGCATCAGC
ACTGTATTGCACTTTCTGCAGCTGGTTCGGACGCGAACGTGGTTCATGATCCCTTTCTTCATTGGAGGAATCTTG
GAAACAATCGGATATGTTGGCCGTCTGCTGTCATCGCTTGAAAGCCCCAACTACAGCACAGGCTCGTATGCCATG
CAAAGCGCCCTTATTCTGATCGCTCCCGCCTTCCTGGCTGCCAGTATTTACATGACCCTCGGTCGCATCATTCGA
ATGGTCCAAGCCGAACAGTACTCGGTGTTCAGGTTGAACTGGGTGACCAAGATCTTTGTTGCGGGCGACGTTCTT
TCCTTTCTGATGCAAGCCTCTGGCGCTGGTCTCATGGTCAGCAACTCTAGCGACCCATCCACGGGCGAGCACATT
ATTATCGGCGGTCTCTTTGTTCAGATTATCTTCTTCGGCTTCTTCATTATCACCGCGCTCATCTTCCAAATGCGA
CTAGCGAAGGCTCCCACCGGCACTTCCGTTGATTTATCGCACATCTGGCGTCGCCACATGAACGCTCTTTACATC
TCCAGTGTCCTGATCTTCGTCCGTTCCATTGTCCGTGTGGTGGAGTACCTGCAGGGATATGACGGCTATCTCATG
AAGCATGAGGTTTTCATTTATGTGTTTGATGCGTTGCTGATGTTCCTGGCGATGGAGATACTCCAATTCATCCAT
CCCAGCCAAGTCAACTGCTATCTGGGGCGTGGAGACCGTTATTCTGACAAGGTGATCAAGACGCAAAAGTTCATG
TCTGTGCCGGTGGAAATGGAGGTTTCGTCCGTTTGA
Gene >Ani_SJS72_1|g3855.t1
ATGGCATTCACTCTCTACTACTACACCCCCTCTGCTGCGGCAGCAGGCATCTTTGTTGTTCTGTTCGGCATCAGC
ACTGTATTGCACTTTCTGCAGCTGGTTCGGACGCGAACGTGGTTCATGATCCCTTTCTTCATTGGAGGAATCTGT
CAGTCACCCAACCCCGACCATGCAGAACTACTACTGACATTATGCTTCATCTTCAGTGGAAACAATCGGATATGT
TGGCCGTCTGCTGTCATCGCTTGAAAGCCCCAACTACAGCACAGGCTCGTATGCCATGCAAAGCGCCCTTATTCT
GATCGCTCCCGCCTTCCTGGCTGCCAGTATTTACATGACCCTCGGTCGCATCATTCGAATGGTCCAAGCCGAACA
GTACTCGGTGTTCAGGTTGAACTGGGTGACCAAGATCTTTGTTGCGGGCGACGTTCTTTCCTTTCTGATGCAAGC
CTCTGGTGCGTATATTCCTGTCTCCGAATCCTTTCTGGCAGTATCGCTAAGAACAGTAGGCGCTGGTCTCATGGT
CAGCAACTCTAGCGACCCATCCACGGGCGAGCACATTATTATCGGCGGTCTCTTTGTTCAGATTATCTTCTTCGG
CTTCTTCATTATCACCGCGCTCATCTTCCAAATGCGACTAGCGAAGGCTCCCACCGGCACTTCCGTTGATTTATC
GCACATCTGGCGTCGCCACATGAACGCTCTTTACATCTCCAGTGTCCTGATCTTCGTCCGTTCCATTGTCCGTGT
GGTGGAGTACCTGCAGGGATATGACGGCTATCTCATGAAGCATGAGGTTTTCATTTATGTGTTTGATGCGTTGCT
GATGTTCCTGGCGATGGAGATACTCCAATTCATCCATCCCAGCCAAGTCAACTGCTATCTGGGGCGTGGAGACCG
TTATTCTGACAAGGTGATCAAGACGCAAAAGTTCATGTCTGTGCCGGTGGAAATGGAGGTTTCGTCCGTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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