© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g3781.t1 |
| Gene name | |
| Location | scaffold_022:22049..23359 |
| Strand | - |
| Gene length (bp) | 1310 |
| Transcript length (bp) | 1191 |
| Coding sequence length (bp) | 1191 |
| Protein length (aa) | 397 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 9.8E-16 | 80 | 212 |
| PF08542 | Rep_fac_C | Replication factor C C-terminal domain | 1.3E-14 | 299 | 384 |
| PF13177 | DNA_pol3_delta2 | DNA polymerase III, delta subunit | 2.1E-11 | 61 | 214 |
| PF03215 | Rad17 | Rad17 P-loop domain | 7.8E-10 | 41 | 127 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0036094 | small molecule binding | No |
| Orthofinder run ID | 3 |
| Orthogroup | 6809 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g3781.t1 MSDYEDSMDVDVPSKSAIQFSSDNTSGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINKFVEAN RLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSSTSTSS STLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDI VIEKEQVNIQPEAVDSLVRLSKGDMRRALNVLQACFASSIPLPMKNAPKDQEAKEKPEAEVITNETIYDCIAAPH PSDIEEIMTTLLATSDVTSCLSTINTLKANKGLALADILAALGDQLQRLEVPAQTRVTWLEGLAEIEWRLAGGGS ESMQTGGLVGVVRNGCELMGK* |
| Coding | >Ani_SJS72_1|g3781.t1 ATGTCCGACTACGAGGACTCAATGGACGTGGACGTCCCCTCCAAGAGCGCAATTCAATTCAGCTCCGACAACACA AGTGGAAAGGCAAAGCGAGTAGCAGCAGATTTGCCAGTTGAAGCTCAAGATAACCTGCCTTGGGTAGAGAAATAC CGCCCCAACACCCTAGAAGATGTATCCGGCCACCAAGACATCCTCGCAACAATCAACAAATTCGTCGAAGCAAAC CGCCTCCCCCACCTCCTCCTCTACGGCCCCCCAGGAACGGGCAAAACATCCACCATCCTCGCCCTAGCCCGCCGA ATCTACGGCGCAAAGAACATGCGCCAAATGGTACTGGAACTAAACGCTAGTGACGATCGCGGTATCGACGTCGTT CGAGAACAAATCAAGACCTTTGCCAGCACAAAACAGATTTTCTCCATGGCACCCTCATCCACCTCCACCTCCTCC TCGACCCTCGCCTCCTACAAACTCATCATTCTCGACGAAGCCGACGCCATGACCGCAACGGCCCAAATGGCTCTC CGTCGCATCATGGAGAAATACACAGCCAACACGCGGTTCTGCATAATCGCCAACTATACACACAAGCTCTCTCCG GCACTCTTGTCCCGATGTACACGATTCCGGTTCAGCCCGCTGAAAGAGGCAGATATCCGGGTATTAGTGGACATA GTGATTGAGAAGGAACAAGTGAATATCCAGCCGGAGGCGGTGGATAGTCTGGTGCGGTTGAGTAAGGGAGATATG CGACGGGCGTTGAATGTGCTGCAGGCTTGTTTTGCGAGTAGTATACCGTTGCCGATGAAGAATGCCCCGAAAGAT CAGGAAGCTAAGGAGAAGCCGGAGGCGGAGGTTATCACGAACGAGACGATATATGATTGCATTGCTGCGCCTCAT CCGTCGGATATCGAGGAGATTATGACGACGTTGTTGGCGACGAGTGATGTTACTTCGTGTTTGAGTACGATTAAT ACGCTCAAGGCGAATAAGGGGTTGGCCTTGGCGGATATTCTTGCTGCGCTTGGGGATCAGTTGCAGAGGCTGGAG GTGCCGGCGCAGACGAGAGTGACGTGGTTGGAAGGGTTGGCGGAGATTGAGTGGCGGTTGGCCGGGGGAGGATCG GAGTCGATGCAGACGGGAGGGTTGGTGGGTGTTGTGAGGAATGGGTGTGAGTTGATGGGGAAATAG |
| Transcript | >Ani_SJS72_1|g3781.t1 ATGTCCGACTACGAGGACTCAATGGACGTGGACGTCCCCTCCAAGAGCGCAATTCAATTCAGCTCCGACAACACA AGTGGAAAGGCAAAGCGAGTAGCAGCAGATTTGCCAGTTGAAGCTCAAGATAACCTGCCTTGGGTAGAGAAATAC CGCCCCAACACCCTAGAAGATGTATCCGGCCACCAAGACATCCTCGCAACAATCAACAAATTCGTCGAAGCAAAC CGCCTCCCCCACCTCCTCCTCTACGGCCCCCCAGGAACGGGCAAAACATCCACCATCCTCGCCCTAGCCCGCCGA ATCTACGGCGCAAAGAACATGCGCCAAATGGTACTGGAACTAAACGCTAGTGACGATCGCGGTATCGACGTCGTT CGAGAACAAATCAAGACCTTTGCCAGCACAAAACAGATTTTCTCCATGGCACCCTCATCCACCTCCACCTCCTCC TCGACCCTCGCCTCCTACAAACTCATCATTCTCGACGAAGCCGACGCCATGACCGCAACGGCCCAAATGGCTCTC CGTCGCATCATGGAGAAATACACAGCCAACACGCGGTTCTGCATAATCGCCAACTATACACACAAGCTCTCTCCG GCACTCTTGTCCCGATGTACACGATTCCGGTTCAGCCCGCTGAAAGAGGCAGATATCCGGGTATTAGTGGACATA GTGATTGAGAAGGAACAAGTGAATATCCAGCCGGAGGCGGTGGATAGTCTGGTGCGGTTGAGTAAGGGAGATATG CGACGGGCGTTGAATGTGCTGCAGGCTTGTTTTGCGAGTAGTATACCGTTGCCGATGAAGAATGCCCCGAAAGAT CAGGAAGCTAAGGAGAAGCCGGAGGCGGAGGTTATCACGAACGAGACGATATATGATTGCATTGCTGCGCCTCAT CCGTCGGATATCGAGGAGATTATGACGACGTTGTTGGCGACGAGTGATGTTACTTCGTGTTTGAGTACGATTAAT ACGCTCAAGGCGAATAAGGGGTTGGCCTTGGCGGATATTCTTGCTGCGCTTGGGGATCAGTTGCAGAGGCTGGAG GTGCCGGCGCAGACGAGAGTGACGTGGTTGGAAGGGTTGGCGGAGATTGAGTGGCGGTTGGCCGGGGGAGGATCG GAGTCGATGCAGACGGGAGGGTTGGTGGGTGTTGTGAGGAATGGGTGTGAGTTGATGGGGAAATAG |
| Gene | >Ani_SJS72_1|g3781.t1 ATGTCCGACTACGAGGACTCAATGGACGTGGACGTCCCCTCCAAGAGCGCAATTCAATTCAGCTCCGACAACACA AGTGGAAAGGCAAAGCGAGTAGCAGCAGATTTGCCAGTTGAAGCTCAAGATAACCTGCCTTGGTACATCCCCTAT GTTTACAAAGCCTTGCGACATTTTCTAACCATCAAAATACAGGGTAGAGAAATACCGCCCCAACACCCTAGAAGA TGTATCCGGCCACCAAGACATCCTCGCAACAATCAACAAATTCGTCGAAGCAAACGTACGTCTCTCCTCTCATTC CCTCAATGATATGCTTAAGCTAACAGCGTTTATCAACTTAACAGCGCCTCCCCCACCTCCTCCTCTACGGCCCCC CAGGAACGGGCAAAACATCCACCATCCTCGCCCTAGCCCGCCGAATCTACGGCGCAAAGAACATGCGCCAAATGG TACTGGAACTAAACGCTAGTGACGATCGCGGTATCGACGTCGTTCGAGAACAAATCAAGACCTTTGCCAGCACAA AACAGATTTTCTCCATGGCACCCTCATCCACCTCCACCTCCTCCTCGACCCTCGCCTCCTACAAACTCATCATTC TCGACGAAGCCGACGCCATGACCGCAACGGCCCAAATGGCTCTCCGTCGCATCATGGAGAAATACACAGCCAACA CGCGGTTCTGCATAATCGCCAACTATACACACAAGCTCTCTCCGGCACTCTTGTCCCGATGTACACGATTCCGGT TCAGCCCGCTGAAAGAGGCAGATATCCGGGTATTAGTGGACATAGTGATTGAGAAGGAACAAGTGAATATCCAGC CGGAGGCGGTGGATAGTCTGGTGCGGTTGAGTAAGGGAGATATGCGACGGGCGTTGAATGTGCTGCAGGCTTGTT TTGCGAGTAGTATACCGTTGCCGATGAAGAATGCCCCGAAAGATCAGGAAGCTAAGGAGAAGCCGGAGGCGGAGG TTATCACGAACGAGACGATATATGATTGCATTGCTGCGCCTCATCCGTCGGATATCGAGGAGATTATGACGACGT TGTTGGCGACGAGTGATGTTACTTCGTGTTTGAGTACGATTAATACGCTCAAGGCGAATAAGGGGTTGGCCTTGG CGGATATTCTTGCTGCGCTTGGGGATCAGTTGCAGAGGCTGGAGGTGCCGGCGCAGACGAGAGTGACGTGGTTGG AAGGGTTGGCGGAGATTGAGTGGCGGTTGGCCGGGGGAGGATCGGAGTCGATGCAGACGGGAGGGTTGGTGGGTG TTGTGAGGAATGGGTGTGAGTTGATGGGGAAATAG |