© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g3727.t1 |
| Gene name | |
| Location | scaffold_021:244812..245800 |
| Strand | - |
| Gene length (bp) | 988 |
| Transcript length (bp) | 780 |
| Coding sequence length (bp) | 780 |
| Protein length (aa) | 260 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06687 | SUR7 | SUR7/PalI family | 5.1E-14 | 50 | 220 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005886 | plasma membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0016020 | membrane | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 26 | 22 |
| 2 | 107 | 129 | 22 |
| 3 | 160 | 182 | 22 |
| 4 | 194 | 216 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g3727.t1 MGCLQIFLPGIGSCVAFLLGIFSLFAGSQRQFLPQADLLTVSDETTNATTTKTEIVDCSDRSVLFTFNPGEAITK ALGTPSGSLSPDSWPSWITDDFEALAPTNTTMVLLLILGTATSAIAIGIRIWTVVCARASESSRPPMYPGSSASS FDFDIPPSSIEFFAFLVSLLSFAIASIIASVITTEFVKLINKSGNGYGVSATTGTSFMGMVWTAAVLQALTTANS LAAILRYRAQHCRCDWDEQAPPESAEQKPLVGAD* |
| Coding | >Ani_SJS72_1|g3727.t1 ATGGGCTGTCTCCAGATCTTCCTGCCTGGTATCGGCTCTTGCGTTGCTTTCCTGCTAGGCATTTTCTCTCTCTTC GCTGGCAGCCAGCGCCAGTTTCTACCCCAGGCAGACCTCTTAACCGTTTCAGATGAGACTACCAACGCCACAACA ACCAAAACCGAAATCGTTGACTGCTCTGACCGCAGCGTGCTGTTCACCTTCAACCCTGGTGAAGCTATAACAAAA GCCTTGGGCACCCCGTCAGGCAGTCTATCCCCAGACAGCTGGCCGTCCTGGATAACAGACGATTTCGAGGCGTTA GCTCCCACCAACACAACGATGGTCCTGCTTCTGATCCTTGGAACTGCCACATCCGCTATAGCCATCGGAATCCGC ATCTGGACGGTCGTGTGTGCGCGAGCATCGGAAAGTAGCAGGCCGCCTATGTACCCCGGAAGCTCGGCATCTAGC TTTGATTTTGACATCCCTCCATCTAGTATAGAATTCTTTGCTTTCCTGGTGAGCCTTCTCAGCTTTGCAATCGCT TCCATCATCGCCAGCGTCATTACCACGGAATTTGTGAAACTGATCAACAAATCCGGTAATGGTTATGGGGTGTCA GCGACGACGGGGACCTCATTCATGGGAATGGTCTGGACAGCTGCGGTGCTGCAAGCTCTTACTACGGCGAATAGT CTCGCTGCTATTCTCCGCTATCGTGCCCAGCATTGCCGGTGTGATTGGGATGAGCAGGCCCCTCCTGAGTCGGCG GAGCAGAAGCCGCTGGTAGGAGCTGATTGA |
| Transcript | >Ani_SJS72_1|g3727.t1 ATGGGCTGTCTCCAGATCTTCCTGCCTGGTATCGGCTCTTGCGTTGCTTTCCTGCTAGGCATTTTCTCTCTCTTC GCTGGCAGCCAGCGCCAGTTTCTACCCCAGGCAGACCTCTTAACCGTTTCAGATGAGACTACCAACGCCACAACA ACCAAAACCGAAATCGTTGACTGCTCTGACCGCAGCGTGCTGTTCACCTTCAACCCTGGTGAAGCTATAACAAAA GCCTTGGGCACCCCGTCAGGCAGTCTATCCCCAGACAGCTGGCCGTCCTGGATAACAGACGATTTCGAGGCGTTA GCTCCCACCAACACAACGATGGTCCTGCTTCTGATCCTTGGAACTGCCACATCCGCTATAGCCATCGGAATCCGC ATCTGGACGGTCGTGTGTGCGCGAGCATCGGAAAGTAGCAGGCCGCCTATGTACCCCGGAAGCTCGGCATCTAGC TTTGATTTTGACATCCCTCCATCTAGTATAGAATTCTTTGCTTTCCTGGTGAGCCTTCTCAGCTTTGCAATCGCT TCCATCATCGCCAGCGTCATTACCACGGAATTTGTGAAACTGATCAACAAATCCGGTAATGGTTATGGGGTGTCA GCGACGACGGGGACCTCATTCATGGGAATGGTCTGGACAGCTGCGGTGCTGCAAGCTCTTACTACGGCGAATAGT CTCGCTGCTATTCTCCGCTATCGTGCCCAGCATTGCCGGTGTGATTGGGATGAGCAGGCCCCTCCTGAGTCGGCG GAGCAGAAGCCGCTGGTAGGAGCTGATTGA |
| Gene | >Ani_SJS72_1|g3727.t1 ATGGGCTGTCTCCAGATCTTCCTGCCTGGTATCGGCTCTTGCGTTGCTTTCCTGCTAGGCATTTTCTCTCTCTTC GCTGGCAGCCAGCGCCAGTTTCTACCCCAGGCAGACCTCTTAACCGTAAGTTAACGATGTTTCCGATCATACCTT CTACCACTCATATACTCTTCACTAGTTACACACAGGAGGTGCCGGTGGACAGGGTGCCCCCGATTATTTCTCCAT CTATACCATGTCCTACTGCACCGGATATCAGGAGATATAGGTTTCAGATGAGACTACCAACGCCACAACAACCAA AACCGAAATCGTTGACTGCTCTGACCGCAGCGTGCTGTTCACCTTCAACCCTGGTGAAGCTATAACAAAAGCCTT GGGCACCCCGTCAGGCAGTCTATCCCCAGACAGCTGGCCGTCCTGGATAACAGACGATTTCGAGGCGTTAGCTCC CACCAACACAACGATGGTCCTGCTTCTGATCCTTGGAACTGCCACATCCGCTATAGCCATCGGAATCCGCATCTG GACGGTCGTGTGTGCGCGAGCATCGGAAAGTAGCAGGCCGCCTATGTACCCCGGAAGCTCGGCATCTAGCTTTGA TTTTGACATCCCTCCATCTAGTATAGAATTCTTTGCTTTCCTGGTTAGTATAGAGTCATGGCCCCTGGCATCATC CTAGATCGCTAATGTCGTGTCTACTATGCAGGTGAGCCTTCTCAGCTTTGCAATCGCTTCCATCATCGCCAGCGT CATTACCACGGAATTTGTGAAACTGATCAACAAATCCGGTAATGGTTATGGGGTGTCAGCGACGACGGGGACCTC ATTCATGGGAATGGTCTGGACAGCTGCGGTGCTGCAAGCTCTTACTACGGCGAATAGTCTCGCTGCTATTCTCCG CTATCGTGCCCAGCATTGCCGGTGTGATTGGGATGAGCAGGCCCCTCCTGAGTCGGCGGAGCAGAAGCCGCTGGT AGGAGCTGATTGA |