© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g3559.t1 |
| Gene name | |
| Location | scaffold_020:145858..148046 |
| Strand | + |
| Gene length (bp) | 2188 |
| Transcript length (bp) | 2013 |
| Coding sequence length (bp) | 2013 |
| Protein length (aa) | 671 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00474 | SSF | Sodium:solute symporter family | 8.3E-22 | 48 | 464 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 29 | 19 |
| 2 | 50 | 72 | 22 |
| 3 | 87 | 109 | 22 |
| 4 | 130 | 152 | 22 |
| 5 | 162 | 184 | 22 |
| 6 | 191 | 213 | 22 |
| 7 | 253 | 275 | 22 |
| 8 | 288 | 310 | 22 |
| 9 | 353 | 375 | 22 |
| 10 | 396 | 418 | 22 |
| 11 | 428 | 450 | 22 |
| 12 | 455 | 477 | 22 |
| 13 | 492 | 514 | 22 |
| 14 | 587 | 609 | 22 |
| 15 | 619 | 641 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g3559.t1 MAAVELVTQGTAYGLLIGLGVFFCGVILIAIKVQKAYLSEDSGTSEMFMVANRSVGTGLTASAVFSSWMWINETV LSAAMCYRYGLAVPLWWGSGLCFQIALMAALGVMAKIRVPYAHTSLEITRMRYGWIGHVIYMVLNLTNNVFGCAS MILTGSQLINGVSGMNFVAATILIPLGVVLYTAVGGLKATFLTDFLHTTVALILIIYFTLSVLTHPEVGGLAGLY DKVVATASENYISGNFEGSLLTMKSKGAIIWGLILKFGNLALVVMDTAFWQKSFASEVNSTVPAYNLAAIAVFGI PWGLGTVIGLTARALHHTPLWPTYPIDITTTEVSKGMVMPYLVKALLGESGMIAFFVLLFMALTSTVSSSMIAVS SILSFDMYKTYINPQASDRRLLGVSHITVVFHAIFITGISIALNYGGANMTWIGYFRPILSCPGIIPLGLTLFWS RQTRLAAILSPVLGFFTGLAIWLATAKSMYGAVNMTTTGEELPALYGAIGSFFSPALYSVVISLYRPYTFDWREF LRIELADEAPTRATPAATQETKVEGVYISTDASPTSTPSRLSLDDVRHPFTEDTLRKLHRWSWIAWAMFVVLVLI TFVLWPMPLYRDYIFTKSFFSGWTTVAIIWQFCAFFAVVVYPLYDGRFEIAKGVQGVLTSSREFLNRHKN* |
| Coding | >Ani_SJS72_1|g3559.t1 ATGGCGGCTGTCGAACTTGTTACGCAAGGGACGGCCTACGGCCTCCTCATCGGTCTTGGTGTGTTCTTCTGCGGG GTGATTCTCATCGCAATCAAGGTGCAGAAGGCGTATCTGTCTGAAGACTCGGGTACGTCAGAGATGTTCATGGTC GCAAATCGATCGGTCGGTACGGGTTTGACTGCATCTGCTGTGTTCTCCTCGTGGATGTGGATCAACGAGACGGTG CTATCGGCTGCGATGTGTTATCGCTATGGATTGGCAGTTCCACTGTGGTGGGGATCGGGTCTTTGTTTTCAGATC GCCTTGATGGCTGCTCTTGGTGTCATGGCCAAGATCCGGGTTCCGTATGCCCATACGTCGCTTGAGATCACTCGT ATGCGATATGGCTGGATCGGACATGTCATCTACATGGTTTTGAATCTGACAAACAACGTTTTTGGTTGTGCCTCG ATGATCTTGACCGGCTCCCAGCTGATAAACGGTGTTTCGGGCATGAACTTCGTTGCGGCAACCATCCTGATTCCT TTGGGAGTTGTTCTTTACACGGCTGTTGGAGGGCTGAAAGCGACGTTTTTGACCGACTTTTTGCATACCACAGTC GCCTTAATCCTGATCATTTATTTCACACTCTCAGTCCTTACTCACCCCGAAGTTGGCGGGTTGGCTGGACTATAC GACAAGGTGGTCGCAACAGCGAGCGAGAATTATATCTCCGGTAACTTCGAGGGATCGCTTCTCACGATGAAATCA AAAGGGGCGATTATTTGGGGCTTAATCTTGAAGTTTGGTAACTTAGCTCTGGTGGTCATGGACACCGCGTTCTGG CAAAAGTCTTTTGCCAGTGAAGTGAATTCTACCGTGCCGGCATACAACCTGGCCGCAATAGCTGTGTTTGGTATC CCCTGGGGCTTAGGCACTGTTATTGGCCTGACCGCTCGAGCGCTCCACCACACTCCTCTCTGGCCCACCTATCCT ATTGATATCACGACAACTGAGGTCAGCAAAGGCATGGTCATGCCCTACCTGGTCAAGGCCCTTCTTGGAGAGTCT GGAATGATCGCCTTCTTTGTTCTCTTGTTCATGGCACTGACCAGCACGGTCTCCTCGTCAATGATCGCCGTCAGC AGTATCCTGTCGTTTGATATGTACAAGACGTACATCAACCCCCAAGCCAGTGATCGCCGGCTCTTGGGAGTTAGC CACATAACTGTCGTATTCCATGCGATCTTCATCACTGGCATTTCCATTGCTCTTAACTACGGGGGCGCCAACATG ACGTGGATCGGTTACTTCCGGCCTATCCTGTCTTGTCCCGGAATCATTCCTCTCGGGTTGACTCTGTTCTGGTCC CGTCAGACCCGCCTGGCGGCTATCCTATCGCCGGTGCTTGGCTTCTTTACTGGTCTTGCGATCTGGCTCGCAACG GCCAAGTCAATGTATGGGGCCGTGAACATGACCACAACTGGAGAAGAGCTGCCCGCACTCTATGGTGCCATCGGG TCTTTCTTCTCACCCGCTCTCTACTCCGTGGTAATTTCTCTATATCGCCCGTACACATTTGACTGGCGAGAGTTC CTCAGAATCGAACTCGCAGATGAAGCACCGACTAGAGCCACGCCCGCTGCAACTCAAGAGACTAAGGTTGAAGGG GTCTATATCTCGACGGATGCCAGCCCGACGTCAACCCCGAGCCGCCTCAGTCTAGATGACGTTCGTCACCCTTTC ACAGAAGATACCCTGCGAAAGCTGCATCGATGGTCATGGATCGCATGGGCGATGTTTGTGGTCTTGGTGCTGATT ACCTTTGTGCTGTGGCCAATGCCGCTTTATCGCGACTATATCTTCACCAAATCCTTCTTCTCCGGATGGACCACG GTCGCGATCATCTGGCAATTCTGTGCCTTTTTCGCTGTTGTGGTCTACCCACTGTATGACGGACGGTTCGAAATT GCTAAGGGTGTACAAGGCGTACTGACGTCAAGTCGTGAATTCCTCAACCGACACAAAAATTAG |
| Transcript | >Ani_SJS72_1|g3559.t1 ATGGCGGCTGTCGAACTTGTTACGCAAGGGACGGCCTACGGCCTCCTCATCGGTCTTGGTGTGTTCTTCTGCGGG GTGATTCTCATCGCAATCAAGGTGCAGAAGGCGTATCTGTCTGAAGACTCGGGTACGTCAGAGATGTTCATGGTC GCAAATCGATCGGTCGGTACGGGTTTGACTGCATCTGCTGTGTTCTCCTCGTGGATGTGGATCAACGAGACGGTG CTATCGGCTGCGATGTGTTATCGCTATGGATTGGCAGTTCCACTGTGGTGGGGATCGGGTCTTTGTTTTCAGATC GCCTTGATGGCTGCTCTTGGTGTCATGGCCAAGATCCGGGTTCCGTATGCCCATACGTCGCTTGAGATCACTCGT ATGCGATATGGCTGGATCGGACATGTCATCTACATGGTTTTGAATCTGACAAACAACGTTTTTGGTTGTGCCTCG ATGATCTTGACCGGCTCCCAGCTGATAAACGGTGTTTCGGGCATGAACTTCGTTGCGGCAACCATCCTGATTCCT TTGGGAGTTGTTCTTTACACGGCTGTTGGAGGGCTGAAAGCGACGTTTTTGACCGACTTTTTGCATACCACAGTC GCCTTAATCCTGATCATTTATTTCACACTCTCAGTCCTTACTCACCCCGAAGTTGGCGGGTTGGCTGGACTATAC GACAAGGTGGTCGCAACAGCGAGCGAGAATTATATCTCCGGTAACTTCGAGGGATCGCTTCTCACGATGAAATCA AAAGGGGCGATTATTTGGGGCTTAATCTTGAAGTTTGGTAACTTAGCTCTGGTGGTCATGGACACCGCGTTCTGG CAAAAGTCTTTTGCCAGTGAAGTGAATTCTACCGTGCCGGCATACAACCTGGCCGCAATAGCTGTGTTTGGTATC CCCTGGGGCTTAGGCACTGTTATTGGCCTGACCGCTCGAGCGCTCCACCACACTCCTCTCTGGCCCACCTATCCT ATTGATATCACGACAACTGAGGTCAGCAAAGGCATGGTCATGCCCTACCTGGTCAAGGCCCTTCTTGGAGAGTCT GGAATGATCGCCTTCTTTGTTCTCTTGTTCATGGCACTGACCAGCACGGTCTCCTCGTCAATGATCGCCGTCAGC AGTATCCTGTCGTTTGATATGTACAAGACGTACATCAACCCCCAAGCCAGTGATCGCCGGCTCTTGGGAGTTAGC CACATAACTGTCGTATTCCATGCGATCTTCATCACTGGCATTTCCATTGCTCTTAACTACGGGGGCGCCAACATG ACGTGGATCGGTTACTTCCGGCCTATCCTGTCTTGTCCCGGAATCATTCCTCTCGGGTTGACTCTGTTCTGGTCC CGTCAGACCCGCCTGGCGGCTATCCTATCGCCGGTGCTTGGCTTCTTTACTGGTCTTGCGATCTGGCTCGCAACG GCCAAGTCAATGTATGGGGCCGTGAACATGACCACAACTGGAGAAGAGCTGCCCGCACTCTATGGTGCCATCGGG TCTTTCTTCTCACCCGCTCTCTACTCCGTGGTAATTTCTCTATATCGCCCGTACACATTTGACTGGCGAGAGTTC CTCAGAATCGAACTCGCAGATGAAGCACCGACTAGAGCCACGCCCGCTGCAACTCAAGAGACTAAGGTTGAAGGG GTCTATATCTCGACGGATGCCAGCCCGACGTCAACCCCGAGCCGCCTCAGTCTAGATGACGTTCGTCACCCTTTC ACAGAAGATACCCTGCGAAAGCTGCATCGATGGTCATGGATCGCATGGGCGATGTTTGTGGTCTTGGTGCTGATT ACCTTTGTGCTGTGGCCAATGCCGCTTTATCGCGACTATATCTTCACCAAATCCTTCTTCTCCGGATGGACCACG GTCGCGATCATCTGGCAATTCTGTGCCTTTTTCGCTGTTGTGGTCTACCCACTGTATGACGGACGGTTCGAAATT GCTAAGGGTGTACAAGGCGTACTGACGTCAAGTCGTGAATTCCTCAACCGACACAAAAATTAG |
| Gene | >Ani_SJS72_1|g3559.t1 ATGGCGGCTGTCGAACTTGTTACGCAAGGGACGGCCTACGGCCTCCTCATCGGTCTTGGTGTGTTCTTCTGCGGG GTGATTCTCATCGCAATCAAGGTGCAGAAGGCGTATCTGTCTGAAGACTCGGGTACGTCAGAGATGTTCATGGTC GCAAATCGATCGGTCGGTACGGGTTTGACTGCATCTGCTGTGTTCTCCTCGTGGATGTGGATCAACGAGACGGTG CTATCGGCTGCGATGTGTTATCGCTATGGATTGGCAGTTCCACTGGTATGTCAGCAGGCTCTCTTTTAATTTTAT GACAGATGCTGATTTGACTGTTCGTACAGTGGTGGGGATCGGGTCTTTGTTTTCAGATCGCCTTGATGGCTGCTC TTGGTGTCATGGCCAAGATCCGGGTTCCGTATGCCCATACGTCGCTTGAGATCACTCGTATGCGATATGGCTGGA TCGGACATGTCATCTACATGGTTTTGAATCTGACAAACAACGTTTTTGGTTGTGCCTCGATGATCTTGACCGGCT CCCAGCTGATAAACGGTGTTTCGGGCATGAACTTCGTTGCGGCAACCATCCTGATTCCTTTGGGAGGTAAGCTTG GGTCATCGCATATCACAGGGTATTATACTGACGAACAATGGCAAAGTTGTTCTTTACACGGCTGTTGGAGGGCTG AAAGCGACGTTTTTGACCGACTTTTTGCATACCACAGTCGCCTTAATCCTGATCATTTATTTCACACTCTCAGTC CTTACTCACCCCGAAGTTGGCGGGTTGGCTGGACTATACGACAAGGTGGTCGCAACAGCGAGCGAGAATTATATC TCCGGTAACTTCGAGGGATCGCTTCTCACGATGAAATCAAAAGGGGCGATTATTTGGGGCTTAATCTTGAAGTTT GGTAACTTAGCTCTGGTGGTCATGGTAGGCTCATTCTTCCTTTCCCCCAGTTATATGGCAGACAATCAGACTCAC TCGCATTTAGGACACCGCGTTCTGGCAAAAGTCTTTTGCCAGTGAAGTGAATTCTACCGTGCCGGCATACAACCT GGCCGCAATAGCTGTGTTTGGTATCCCCTGGGGCTTAGGCACTGTTATTGGCCTGACCGCTCGAGCGCTCCACCA CACTCCTCTCTGGCCCACCTATCCTATTGATATCACGACAACTGAGGTCAGCAAAGGCATGGTCATGCCCTACCT GGTCAAGGCCCTTCTTGGAGAGTCTGGAATGATCGCCTTCTTTGTTCTCTTGTTCATGGCACTGACCAGCACGGT CTCCTCGTCAATGATCGCCGTCAGCAGTATCCTGTCGTTTGATATGTACAAGACGTACATCAACCCCCAAGCCAG TGATCGCCGGCTCTTGGGAGTTAGCCACATAACTGTCGTATTCCATGCGATCTTCATCACTGGCATTTCCATTGC TCTTAACTACGGGGGCGCCAACATGACGTGGATCGGTTACTTCCGGCCTATCCTGTCTTGTCCCGGAATCATTCC TCTCGGGTTGACTCTGTTCTGGTCCCGTCAGACCCGCCTGGCGGCTATCCTATCGCCGGTGCTTGGCTTCTTTAC TGGTCTTGCGATCTGGCTCGCAACGGCCAAGTCAATGTATGGGGCCGTGAACATGACCACAACTGGAGAAGAGCT GCCCGCACTCTATGGTGCCATCGGGTCTTTCTTCTCACCCGCTCTCTACTCCGTGGTAATTTCTCTATATCGCCC GTACACATTTGACTGGCGAGAGTTCCTCAGAATCGAACTCGCAGATGAAGCACCGACTAGAGCCACGCCCGCTGC AACTCAAGAGACTAAGGTTGAAGGGGTCTATATCTCGACGGATGCCAGCCCGACGTCAACCCCGAGCCGCCTCAG TCTAGATGACGTTCGTCACCCTTTCACAGAAGATACCCTGCGAAAGCTGCATCGATGGTCATGGATCGCATGGGC GATGTTTGTGGTCTTGGTGCTGATTACCTTTGTGCTGTGGCCAATGCCGCTTTATCGCGACTATATCTTCACCAA ATCCTTCTTCTCCGGATGGACCACGGTCGCGATCATCTGGCAATTCTGTGCCTTTTTCGCTGTTGTGGTCTACCC ACTGTATGACGGACGGTTCGAAATTGCTAAGGGTGTACAAGGCGTACTGACGTCAAGTCGTGAATTCCTCAACCG ACACAAAAATTAG |