Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS72_1|g3443.t1
Gene name
Locationscaffold_019:203763..204212
Strand+
Gene length (bp)449
Transcript length (bp)360
Coding sequence length (bp)360
Protein length (aa) 120

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11779 SPT_ssu-like Small subunit of serine palmitoyltransferase-like 1.9E-26 11 64

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 17 0.5

Transmembrane Domains

Domain # Start End Length
1 36 58 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS72_1|g3443.t1
MTLFWILNSFMRWVRLKIYQYEVTFAVYMLTPTEKFIFNSLLLTLLSMIVTGIYVYLPDHIRSIYSHLYYYWAGE
RPFISASLPSISSVFRETGTQTLGVMYETAKNAAATATAPIAEL*
Coding >Ani_SJS72_1|g3443.t1
ATGACTCTCTTCTGGATCCTGAACTCTTTCATGCGCTGGGTGCGCTTGAAGATATATCAATATGAGGTGACCTTC
GCCGTGTACATGCTTACGCCTACCGAAAAGTTCATTTTTAATTCCCTTCTCCTCACTCTCCTTTCAATGATTGTA
ACCGGCATCTACGTCTACCTTCCCGATCATATCCGATCCATTTATAGTCACCTTTACTACTACTGGGCCGGCGAG
CGTCCGTTTATCTCTGCAAGCCTTCCATCAATCAGCTCCGTATTCCGGGAGACCGGTACCCAGACTCTAGGAGTG
ATGTACGAGACGGCCAAGAATGCTGCTGCGACGGCCACTGCTCCAATCGCTGAACTGTGA
Transcript >Ani_SJS72_1|g3443.t1
ATGACTCTCTTCTGGATCCTGAACTCTTTCATGCGCTGGGTGCGCTTGAAGATATATCAATATGAGGTGACCTTC
GCCGTGTACATGCTTACGCCTACCGAAAAGTTCATTTTTAATTCCCTTCTCCTCACTCTCCTTTCAATGATTGTA
ACCGGCATCTACGTCTACCTTCCCGATCATATCCGATCCATTTATAGTCACCTTTACTACTACTGGGCCGGCGAG
CGTCCGTTTATCTCTGCAAGCCTTCCATCAATCAGCTCCGTATTCCGGGAGACCGGTACCCAGACTCTAGGAGTG
ATGTACGAGACGGCCAAGAATGCTGCTGCGACGGCCACTGCTCCAATCGCTGAACTGTGA
Gene >Ani_SJS72_1|g3443.t1
ATGACTCTCTTCTGGATCCTGAACTCTTTCATGCGCTGGGTGCGCTTGAAGATATATCAATATGAGGTGACCTTC
GCCGTGTACATGCTTACGCCTACCGAAAAGTTCATTTTTAGTACGTTCCCCCGGTTGGAACCTGGCCACAAGTTT
CGAGCTTGCATTTCTTGCATTAAAGCCGCATGGTGCTAACAAAGAACGTTCTAGATTCCCTTCTCCTCACTCTCC
TTTCAATGATTGTAACCGGCATCTACGTCTACCTTCCCGATCATATCCGATCCATTTATAGTCACCTTTACTACT
ACTGGGCCGGCGAGCGTCCGTTTATCTCTGCAAGCCTTCCATCAATCAGCTCCGTATTCCGGGAGACCGGTACCC
AGACTCTAGGAGTGATGTACGAGACGGCCAAGAATGCTGCTGCGACGGCCACTGCTCCAATCGCTGAACTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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