Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS72_1|g342.t1
Gene name
Locationscaffold_002:18348..19374
Strand-
Gene length (bp)1026
Transcript length (bp)882
Coding sequence length (bp)882
Protein length (aa) 294

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04479 RTA1 RTA1 like protein 5.6E-73 58 281

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 17 0.5

Transmembrane Domains

Domain # Start End Length
1 27 49 22
2 56 75 19
3 85 107 22
4 128 150 22
5 165 187 22
6 218 237 19
7 257 279 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS72_1|g342.t1
MSLTCTHVTPECPVTATTYGYYPNLGGNIFFAVYFGLLGTLQLGLGVYYRSWTMLIAMVIGGYMELAGYIGRILM
NHNPWDQGGFKLQIVCLVLAPTFIAAGIYLTLKHVILSLGPEHSRLKPRLFTWIFISCDVGSLILQAAGGGVAAA
AGSENQNLLKVGDDIMVAGIAFQVGTMSVCGLLALDFFIRVVRKGPGLGGEKYIDENGNLTGPKHLRVVVWAGIV
AYFATLIRCIYRIPEMAGGWGNPLMQKENEFLVLDGMMMAIAVSCLTYLYPGFFLQSIRKGMKKTPKA*
Coding >Ani_SJS72_1|g342.t1
ATGAGCCTCACTTGCACGCACGTCACACCGGAATGTCCCGTCACGGCGACAACATATGGCTACTACCCCAACCTA
GGCGGTAATATCTTTTTCGCCGTCTACTTTGGCCTACTCGGCACCCTCCAACTTGGTCTCGGCGTCTACTACCGC
TCCTGGACCATGTTGATAGCGATGGTAATCGGCGGGTACATGGAACTAGCGGGATACATCGGCCGAATCTTAATG
AACCATAATCCCTGGGACCAAGGCGGCTTCAAACTGCAAATTGTCTGTCTCGTGCTCGCCCCGACCTTCATCGCC
GCCGGTATCTATCTCACCCTGAAGCACGTCATCCTCTCCTTGGGCCCGGAACACTCGCGTCTCAAGCCCCGGCTC
TTTACCTGGATCTTTATCAGCTGTGATGTCGGATCGCTCATTCTCCAGGCCGCAGGTGGTGGTGTTGCCGCTGCA
GCGGGCAGCGAGAATCAGAATTTGCTGAAGGTGGGCGATGATATCATGGTGGCGGGTATCGCCTTCCAGGTGGGC
ACGATGTCAGTTTGTGGTCTGTTGGCGCTGGATTTCTTTATCCGCGTTGTGAGAAAGGGACCTGGTTTGGGCGGC
GAGAAGTATATTGATGAGAATGGGAATCTCACTGGGCCGAAGCACCTCAGGGTTGTTGTTTGGGCGGGCATCGTG
GCTTACTTTGCTACTTTGATCCGGTGTATTTATCGTATTCCCGAAATGGCCGGTGGATGGGGTAACCCGCTCATG
CAGAAAGAGAATGAATTTTTGGTTTTGGATGGAATGATGATGGCCATCGCCGTGAGCTGCCTTACCTACCTCTAC
CCTGGATTCTTCCTGCAATCTATCCGGAAGGGTATGAAGAAGACTCCGAAAGCCTAG
Transcript >Ani_SJS72_1|g342.t1
ATGAGCCTCACTTGCACGCACGTCACACCGGAATGTCCCGTCACGGCGACAACATATGGCTACTACCCCAACCTA
GGCGGTAATATCTTTTTCGCCGTCTACTTTGGCCTACTCGGCACCCTCCAACTTGGTCTCGGCGTCTACTACCGC
TCCTGGACCATGTTGATAGCGATGGTAATCGGCGGGTACATGGAACTAGCGGGATACATCGGCCGAATCTTAATG
AACCATAATCCCTGGGACCAAGGCGGCTTCAAACTGCAAATTGTCTGTCTCGTGCTCGCCCCGACCTTCATCGCC
GCCGGTATCTATCTCACCCTGAAGCACGTCATCCTCTCCTTGGGCCCGGAACACTCGCGTCTCAAGCCCCGGCTC
TTTACCTGGATCTTTATCAGCTGTGATGTCGGATCGCTCATTCTCCAGGCCGCAGGTGGTGGTGTTGCCGCTGCA
GCGGGCAGCGAGAATCAGAATTTGCTGAAGGTGGGCGATGATATCATGGTGGCGGGTATCGCCTTCCAGGTGGGC
ACGATGTCAGTTTGTGGTCTGTTGGCGCTGGATTTCTTTATCCGCGTTGTGAGAAAGGGACCTGGTTTGGGCGGC
GAGAAGTATATTGATGAGAATGGGAATCTCACTGGGCCGAAGCACCTCAGGGTTGTTGTTTGGGCGGGCATCGTG
GCTTACTTTGCTACTTTGATCCGGTGTATTTATCGTATTCCCGAAATGGCCGGTGGATGGGGTAACCCGCTCATG
CAGAAAGAGAATGAATTTTTGGTTTTGGATGGAATGATGATGGCCATCGCCGTGAGCTGCCTTACCTACCTCTAC
CCTGGATTCTTCCTGCAATCTATCCGGAAGGGTATGAAGAAGACTCCGAAAGCCTAG
Gene >Ani_SJS72_1|g342.t1
ATGAGCCTCACTTGCACGCACGTCACACCGGAATGTCCCGTCACGGCGACAACATATGGCTACTACCCCAACCTA
GGCGGTAATATCTTTTTCGCCGTCTACTTTGGCCTACTCGGCACCCTCCAACTTGGTCTCGGCGTCTACTACCGC
TCCTGGACCATGTTGATAGCGATGGTAATCGGCGGGTACATGGAACTAGCGGGATACATCGGCCGAATCTTAATG
AACCATAATCCCTGGGACCAAGGCGGCTTCAAACTGCAAATTGTCTGTCTCGTGCTCGCCCCGACCTTCATCGCC
GCCGGTATCTATCTCACCCTGAAGCACGTCATCCTCTCCTTGGGCCCGGAACACTCGCGTCTCAAGCCCCGGCTC
TTTACCTGGATCTTTATCAGCTGTGATGTCGGATCGCTCATTCTCCAGGCCGCAGGTGGTGGTGTTGCCGCTGCA
GCGGGCAGCGAGAATCAGAATTTGCTGAAGGTGGGCGATGATATCATGGTGGCGGGTATCGCCTTCCAGGTGGGC
ACGATGTCAGTTTGTGGTCTGTTGGCGCTGGATTTCTTTATCCGCGTTGTGAGAAAGGGACCTGGTTTGGGCGGC
GAGAAGTATATTGATGAGAATGGGAATCTCACTGGGCCGAAGCACCTCAGGGTTGTTGTTTGGGCGGGCATCGTG
GCTTACTTTGCTACTTTGATCCGGTGTATTTATCGGTAAGTCCCTCTCTACTTCCACGCTCTCAAGCTATGGACG
ATACGATGTACTAACATAGTTTACCGTGGGTAGTATTCCCGAAATGGCCGGTGGATGGGGTAACCCGCTCATGCA
GAAAGAGAATGAATTTTTGGTTTTGGATGGAATGTGAGCATTCCTTTTGATCATGTTTTCCGTTCTATGTTGTGA
ATCCAGACGTACTGATTGGAGTTATTTAGGATGATGGCCATCGCCGTGAGCTGCCTTACCTACCTCTACCCTGGA
TTCTTCCTGCAATCTATCCGGAAGGGTATGAAGAAGACTCCGAAAGCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail