© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g3411.t1 |
| Gene name | |
| Location | scaffold_019:87595..88472 |
| Strand | - |
| Gene length (bp) | 877 |
| Transcript length (bp) | 582 |
| Coding sequence length (bp) | 582 |
| Protein length (aa) | 194 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00036 | EF-hand_1 | EF hand | 5.5E-08 | 155 | 180 |
| PF13499 | EF-hand_7 | EF-hand domain pair | 1.3E-12 | 111 | 179 |
| PF13405 | EF-hand_6 | EF-hand domain | 3.1E-05 | 113 | 141 |
| PF13202 | EF-hand_5 | EF hand | 9.1E-05 | 45 | 67 |
| PF13202 | EF-hand_5 | EF hand | 1.0E-02 | 117 | 134 |
| PF13202 | EF-hand_5 | EF hand | 2.2E-06 | 156 | 178 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 1.4E-02 | 89 | 135 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 3.0E-04 | 159 | 180 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005509 | calcium ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0046872 | metal ion binding | No |
| Orthofinder run ID | 3 |
| Orthogroup | 6479 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g3411.t1 MDHSSEPNNAALYDARRRRGSVGTSQLFDNIVSASNFDRDEVDRLRKRFMKLDKDSSGTIDRDEFLSLPQVSSNP LATRMIAIFDEDGGGDVDFQEFVSGLSAFSSKGNKEEKLRFAFKVYDIDRDGFISNGELFIVLKMMVGNNLKDVQ LQQIVDKTIMEADKDGDGKISFEEFTDMVENTDVSLSMTLNQI* |
| Coding | >Ani_SJS72_1|g3411.t1 ATGGATCATTCCAGCGAACCCAACAACGCGGCCCTTTACGATGCGCGGAGACGCAGGGGCTCCGTCGGAACTTCT CAGCTCTTCGACAACATTGTGTCCGCCTCCAACTTCGATCGCGATGAAGTGGACCGTCTCCGCAAGCGCTTTATG AAGCTTGATAAGGACAGCTCCGGCACCATCGACCGCGATGAATTCCTCTCCCTTCCTCAAGTCTCCTCCAACCCG CTCGCCACGAGAATGATTGCCATTTTCGACGAAGACGGCGGCGGCGATGTCGACTTCCAAGAATTCGTCTCCGGG TTATCAGCCTTCAGTTCCAAGGGCAACAAAGAAGAGAAGCTGCGCTTCGCATTCAAAGTGTACGATATCGATCGC GACGGGTTTATCTCCAATGGCGAATTGTTCATCGTGCTGAAGATGATGGTCGGCAATAACTTGAAGGATGTGCAG TTGCAGCAGATTGTCGACAAGACGATCATGGAGGCCGATAAGGATGGTGATGGCAAGATTAGCTTCGAGGAGTTT ACGGATATGGTCGAGAACACGGATGTTAGTTTGAGTATGACGTTGAACCAGATCTGA |
| Transcript | >Ani_SJS72_1|g3411.t1 ATGGATCATTCCAGCGAACCCAACAACGCGGCCCTTTACGATGCGCGGAGACGCAGGGGCTCCGTCGGAACTTCT CAGCTCTTCGACAACATTGTGTCCGCCTCCAACTTCGATCGCGATGAAGTGGACCGTCTCCGCAAGCGCTTTATG AAGCTTGATAAGGACAGCTCCGGCACCATCGACCGCGATGAATTCCTCTCCCTTCCTCAAGTCTCCTCCAACCCG CTCGCCACGAGAATGATTGCCATTTTCGACGAAGACGGCGGCGGCGATGTCGACTTCCAAGAATTCGTCTCCGGG TTATCAGCCTTCAGTTCCAAGGGCAACAAAGAAGAGAAGCTGCGCTTCGCATTCAAAGTGTACGATATCGATCGC GACGGGTTTATCTCCAATGGCGAATTGTTCATCGTGCTGAAGATGATGGTCGGCAATAACTTGAAGGATGTGCAG TTGCAGCAGATTGTCGACAAGACGATCATGGAGGCCGATAAGGATGGTGATGGCAAGATTAGCTTCGAGGAGTTT ACGGATATGGTCGAGAACACGGATGTTAGTTTGAGTATGACGTTGAACCAGATCTGA |
| Gene | >Ani_SJS72_1|g3411.t1 ATGGATCATTCCAGCGAACCCAACAACGCGGCCCTTTACGATGCGCGGAGACGCAGGGGCTCCGTCGGAACTTCT CAGCTCTTCGACAACATTGTGTCCGCCTCCAACTGTGGGTAGCGGTCGCGTTTAGTAACAATATCAATCGGGGTG TCCGGGCTTGCTGACTACATCATCGGAATCTGGCAGTCGATCGCGATGAAGTGGACCGTCTCCGCAAGCGCTTTA TGAAGCTTGATAAGGTACTCCCCCATTCTCCACGTTATCCTCCCTCCCATATCTAGAGCTAACCATAATGTGAAT GCATACAGGACAGCTCCGGCACCATCGACCGCGATGAATTCCTCTCCCTTCCTCAAGTCTCCTCCAACCCGCTCG CCACGAGGTACTTTCCCCCATACTACCTCCCAACAACAATTACACCCAAATACAAAGGACGGAATAATAACCAAA TAAAATGAAATGAACAGAATGATTGCCATTTTCGACGAAGACGGCGGCGGCGATGTCGACTTCCAAGAATTCGTC TCCGGGTTATCAGCCTTCAGTTCCAAGGGCAACAAAGAAGAGAAGCTGCGCTTCGCATTCAAAGTGTACGATATC GATCGCGACGGGTTTATCTCCAATGGCGAATTGTTCATCGTGCTGAAGATGATGGTCGGCAATAACTTGAAGGAT GTGCAGTTGCAGCAGATTGTCGACAAGACGATCATGGAGGCCGATAAGGATGGTGATGGCAAGATTAGCTTCGAG GAGTTTACGGATATGGTCGAGAACACGGATGTTAGTTTGAGTATGACGTTGAGTATGTTCCCTGATACACCACTT CTACACTTTTGGGGGCTGATGGGTTGCTGACTGTTTTGTAGACCAGATCTGA |