© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g3367.t1 |
| Gene name | |
| Location | scaffold_018:368255..369564 |
| Strand | + |
| Gene length (bp) | 1309 |
| Transcript length (bp) | 1242 |
| Coding sequence length (bp) | 1242 |
| Protein length (aa) | 414 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00487 | FA_desaturase | Fatty acid desaturase | 3.0E-20 | 72 | 346 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0044238 | primary metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 25 | 47 | 22 |
| 2 | 62 | 84 | 22 |
| 3 | 96 | 118 | 22 |
| 4 | 220 | 242 | 22 |
| 5 | 249 | 271 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g3367.t1 MQDLNQKVTVDDLRRAVPEYCFTPSLFWSCFYLFRDLVYSAILLIALYQLLQTSAVRNSSLLYYLTVNVYGVCQG IVWTGLWVIAHDCGHSAFSRWSVLNDSVGFVLHSSLLAPYFSWKSTHRRHHIYANHIEKDLNYVPPLRQSYADSI GQAVETLEDIGQDAPFVLFLRILLQQTIGWNWYILTNITCPPTAVPKKGMSMWRHSHFDPQGALFYPSEWLSIVL SDLGCFAVITGLYQLYLQFGSFETLFWVYIVPWTWVNHWIVMITYLHHTHPSVPKYTPESWSFLRGATATMDRDF GIIGTHFFHHISTDHVTHHLFSRIPHYYGPVASKAIVPLLGQHYHGRGEFTYQELKTAFSRCQWVEEDPGKDVAF GLRATETLTNRDVKNTGLWYRGGRSPLPEYKMRGSKSL* |
| Coding | >Ani_SJS72_1|g3367.t1 ATGCAGGATCTAAATCAGAAGGTGACGGTGGACGACCTTCGTCGCGCAGTGCCCGAGTACTGCTTCACGCCGTCC CTGTTCTGGTCCTGCTTCTACCTGTTTCGGGACCTGGTATACTCGGCTATTCTGCTGATCGCGCTGTATCAGCTG CTACAAACCAGCGCAGTGCGGAACTCATCACTGCTCTACTATCTCACCGTCAACGTGTATGGAGTCTGTCAAGGC ATTGTCTGGACGGGCCTCTGGGTGATTGCACACGACTGTGGCCACAGCGCCTTCTCGCGCTGGAGTGTGCTCAAT GACAGCGTCGGATTTGTACTGCACTCTTCCCTCCTTGCCCCGTATTTCTCGTGGAAGTCAACTCATCGGCGACAC CATATCTATGCCAATCACATTGAAAAGGATCTGAACTATGTGCCGCCGCTGCGCCAGTCCTACGCCGATAGCATC GGCCAGGCGGTCGAGACGCTCGAGGATATCGGGCAGGATGCGCCCTTCGTCCTCTTCCTCCGCATCTTGCTGCAG CAGACCATCGGCTGGAACTGGTATATCCTGACCAACATCACCTGCCCTCCGACAGCGGTTCCCAAGAAAGGTATG TCAATGTGGCGCCACAGTCATTTCGATCCCCAAGGTGCATTGTTCTATCCCTCCGAGTGGCTGTCCATTGTGCTG TCGGATCTGGGCTGCTTTGCTGTGATCACTGGGCTTTATCAGCTTTATCTGCAGTTTGGCTCCTTCGAGACGCTT TTTTGGGTTTATATTGTGCCGTGGACATGGGTGAACCACTGGATCGTAATGATCACTTATCTGCATCATACCCAT CCATCAGTGCCTAAATACACACCGGAATCGTGGAGCTTCTTGCGTGGCGCGACCGCAACCATGGACCGCGACTTC GGCATCATTGGGACGCATTTCTTCCATCATATCTCGACCGACCACGTCACTCACCATTTATTCTCGCGCATCCCG CATTATTACGGGCCTGTAGCCAGTAAGGCGATTGTTCCCCTGCTGGGCCAGCACTACCACGGACGGGGAGAATTC ACTTACCAGGAGCTGAAGACGGCCTTCAGCCGGTGTCAGTGGGTGGAGGAGGACCCTGGAAAAGATGTAGCTTTT GGTTTACGCGCAACGGAGACGTTGACCAACAGGGACGTGAAGAACACAGGGTTATGGTATCGCGGAGGACGCAGT CCCTTGCCAGAGTATAAGATGCGCGGATCCAAGTCCCTCTAA |
| Transcript | >Ani_SJS72_1|g3367.t1 ATGCAGGATCTAAATCAGAAGGTGACGGTGGACGACCTTCGTCGCGCAGTGCCCGAGTACTGCTTCACGCCGTCC CTGTTCTGGTCCTGCTTCTACCTGTTTCGGGACCTGGTATACTCGGCTATTCTGCTGATCGCGCTGTATCAGCTG CTACAAACCAGCGCAGTGCGGAACTCATCACTGCTCTACTATCTCACCGTCAACGTGTATGGAGTCTGTCAAGGC ATTGTCTGGACGGGCCTCTGGGTGATTGCACACGACTGTGGCCACAGCGCCTTCTCGCGCTGGAGTGTGCTCAAT GACAGCGTCGGATTTGTACTGCACTCTTCCCTCCTTGCCCCGTATTTCTCGTGGAAGTCAACTCATCGGCGACAC CATATCTATGCCAATCACATTGAAAAGGATCTGAACTATGTGCCGCCGCTGCGCCAGTCCTACGCCGATAGCATC GGCCAGGCGGTCGAGACGCTCGAGGATATCGGGCAGGATGCGCCCTTCGTCCTCTTCCTCCGCATCTTGCTGCAG CAGACCATCGGCTGGAACTGGTATATCCTGACCAACATCACCTGCCCTCCGACAGCGGTTCCCAAGAAAGGTATG TCAATGTGGCGCCACAGTCATTTCGATCCCCAAGGTGCATTGTTCTATCCCTCCGAGTGGCTGTCCATTGTGCTG TCGGATCTGGGCTGCTTTGCTGTGATCACTGGGCTTTATCAGCTTTATCTGCAGTTTGGCTCCTTCGAGACGCTT TTTTGGGTTTATATTGTGCCGTGGACATGGGTGAACCACTGGATCGTAATGATCACTTATCTGCATCATACCCAT CCATCAGTGCCTAAATACACACCGGAATCGTGGAGCTTCTTGCGTGGCGCGACCGCAACCATGGACCGCGACTTC GGCATCATTGGGACGCATTTCTTCCATCATATCTCGACCGACCACGTCACTCACCATTTATTCTCGCGCATCCCG CATTATTACGGGCCTGTAGCCAGTAAGGCGATTGTTCCCCTGCTGGGCCAGCACTACCACGGACGGGGAGAATTC ACTTACCAGGAGCTGAAGACGGCCTTCAGCCGGTGTCAGTGGGTGGAGGAGGACCCTGGAAAAGATGTAGCTTTT GGTTTACGCGCAACGGAGACGTTGACCAACAGGGACGTGAAGAACACAGGGTTATGGTATCGCGGAGGACGCAGT CCCTTGCCAGAGTATAAGATGCGCGGATCCAAGTCCCTCTAA |
| Gene | >Ani_SJS72_1|g3367.t1 ATGCAGGATCTAAATCAGAAGGTGACGGTGGACGACCTTCGTCGCGCAGTGCCCGAGTACTGCTTCACGCCGTCC CTGTTCTGGTCCTGCTTCTACCTGTTTCGGGACCTGGTATACTCGGCTATTCTGCTGATCGCGCTGTATCAGCTG CTACAAACCAGCGCAGTGCGGAACTCATCACTGCTCTACTATCTCACCGTCAACGTGTATGGAGTCTGTCAAGGC ATTGTCTGGACGGGCCTCTGGGTGATTGCACACGACTGTGGCCACAGCGCCTTCTCGCGCTGGAGTGTGCTCAAT GACAGCGTCGGATTTGTACTGCACTCTTCCCTCCTTGCCCCGTATTTCTCGTGGAAGTCAACTCATCGGCGACAC CATATCTATGCCAATCACATTGAAAAGGATCTGAACTATGTGCCGCCGCTGCGCCAGTCCTACGCCGATAGCATC GGCCAGGCGGTCGAGACGCTCGAGGATATCGGGCAGGATGCGCCCTTCGTCCTCTTCCTCCGCATCTTGCTGCAG CAGACCATCGGCTGGAACTGGTATATCCTGACCAACATCACCTGCCCTCCGACAGCGGTTCCCAAGAAAGGTATG TCAATGTGGCGCCACAGTCATTTCGATCCCCAAGGTGCATTGTTCTATCCCTCCGAGTGGCTGTCCATTGTGCTG TCGGATCTGGGCTGCTTTGCTGTGATCACTGGGCTTTATCAGCTTTATCTGCAGTTTGGCTCCTTCGAGACGCTT TTTTGGGTTTATATTGTGCCGTGGACATGGGTGAACCACTGGATCGGTATGTGCAACTCTTCCCTTTCCTCCGGC GAATGAAGTTGTCTAACAGGATCTGACTGAGTACCTAGTAATGATCACTTATCTGCATCATACCCATCCATCAGT GCCTAAATACACACCGGAATCGTGGAGCTTCTTGCGTGGCGCGACCGCAACCATGGACCGCGACTTCGGCATCAT TGGGACGCATTTCTTCCATCATATCTCGACCGACCACGTCACTCACCATTTATTCTCGCGCATCCCGCATTATTA CGGGCCTGTAGCCAGTAAGGCGATTGTTCCCCTGCTGGGCCAGCACTACCACGGACGGGGAGAATTCACTTACCA GGAGCTGAAGACGGCCTTCAGCCGGTGTCAGTGGGTGGAGGAGGACCCTGGAAAAGATGTAGCTTTTGGTTTACG CGCAACGGAGACGTTGACCAACAGGGACGTGAAGAACACAGGGTTATGGTATCGCGGAGGACGCAGTCCCTTGCC AGAGTATAAGATGCGCGGATCCAAGTCCCTCTAA |