© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g3192.t1 |
| Gene name | |
| Location | scaffold_017:279830..281006 |
| Strand | + |
| Gene length (bp) | 1176 |
| Transcript length (bp) | 1032 |
| Coding sequence length (bp) | 1032 |
| Protein length (aa) | 344 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05739 | SNARE | SNARE domain | 3.4E-12 | 287 | 339 |
| PF11416 | Syntaxin-5_N | Syntaxin-5 N-terminal, Sly1p-binding domain | 1.8E-10 | 1 | 23 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 322 | 341 | 19 |
| Orthofinder run ID | 3 |
| Orthogroup | 4032 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g3192.t1 MTGPSIQDRTGEFHAILGQAQKRMAANKASSQRQALLTDAQRKQANGSADGQGGKRRSEFARRAVEIGRGITATT AKLQRLAELAKRKTLFDDRPVEISELTFVIKQDLASLNQQIASLQALTLSQHPKSNRSKADQEGEHNDNVVVMLQ GKLADVGANFKDVLEVRTKNIQASRSRTENFVSSVSSKTHSALDTQRSDSPLYNTSGRRTPQPGGASDLLTLEPS NPSPLGRPSMHSDQQLLVMEEAQTSNAYIQGRGEAIDAIERTISELGGIFGQLAQMVSEQSDMIQRIDANTEDVV DNVQGAHRELLKYWTRVSGNRWLIAKMFGVLMIFFLLWVLISG* |
| Coding | >Ani_SJS72_1|g3192.t1 ATGACCGGCCCGTCCATCCAAGATCGTACCGGCGAGTTCCACGCCATTCTGGGTCAAGCCCAGAAGCGCATGGCC GCCAACAAAGCCAGTTCACAGCGCCAGGCTCTTTTGACAGATGCGCAGCGGAAACAAGCAAACGGTTCCGCAGAC GGGCAGGGTGGCAAACGACGATCGGAGTTTGCCCGGAGAGCTGTGGAAATTGGACGAGGCATCACGGCGACGACT GCGAAGCTGCAGAGACTGGCCGAGTTGGCCAAGCGAAAGACACTCTTTGACGACAGACCGGTTGAGATTTCCGAG TTGACGTTTGTGATCAAACAAGATCTCGCCTCGTTGAATCAGCAAATCGCCTCGTTGCAAGCGCTTACTCTTTCA CAACATCCTAAGAGCAATCGGTCGAAGGCGGACCAGGAAGGAGAGCATAATGACAATGTGGTTGTCATGCTACAA GGAAAATTGGCAGATGTGGGAGCCAACTTCAAAGACGTCCTTGAAGTGCGCACAAAGAACATCCAGGCCTCGCGA TCCAGAACCGAGAACTTTGTCTCCTCAGTATCCTCAAAGACACATTCTGCCCTCGATACGCAGCGCTCCGATTCC CCACTTTACAACACATCTGGACGGCGGACGCCCCAGCCGGGCGGCGCTTCCGATCTACTGACTCTGGAACCCTCG AACCCGTCTCCACTCGGCCGCCCCTCCATGCACTCAGATCAGCAACTACTGGTCATGGAGGAAGCCCAGACGAGC AACGCCTATATCCAAGGGCGTGGTGAGGCAATTGATGCGATTGAACGCACCATCAGCGAGCTGGGTGGTATCTTC GGCCAGCTTGCGCAGATGGTCAGCGAGCAGTCCGACATGATCCAGCGGATAGATGCCAACACGGAAGATGTGGTG GATAACGTGCAGGGAGCGCATCGCGAGTTACTGAAGTACTGGACGCGGGTATCCGGGAACCGATGGCTCATCGCC AAGATGTTTGGCGTTCTAATGATCTTCTTCCTACTCTGGGTGTTGATATCGGGATAG |
| Transcript | >Ani_SJS72_1|g3192.t1 ATGACCGGCCCGTCCATCCAAGATCGTACCGGCGAGTTCCACGCCATTCTGGGTCAAGCCCAGAAGCGCATGGCC GCCAACAAAGCCAGTTCACAGCGCCAGGCTCTTTTGACAGATGCGCAGCGGAAACAAGCAAACGGTTCCGCAGAC GGGCAGGGTGGCAAACGACGATCGGAGTTTGCCCGGAGAGCTGTGGAAATTGGACGAGGCATCACGGCGACGACT GCGAAGCTGCAGAGACTGGCCGAGTTGGCCAAGCGAAAGACACTCTTTGACGACAGACCGGTTGAGATTTCCGAG TTGACGTTTGTGATCAAACAAGATCTCGCCTCGTTGAATCAGCAAATCGCCTCGTTGCAAGCGCTTACTCTTTCA CAACATCCTAAGAGCAATCGGTCGAAGGCGGACCAGGAAGGAGAGCATAATGACAATGTGGTTGTCATGCTACAA GGAAAATTGGCAGATGTGGGAGCCAACTTCAAAGACGTCCTTGAAGTGCGCACAAAGAACATCCAGGCCTCGCGA TCCAGAACCGAGAACTTTGTCTCCTCAGTATCCTCAAAGACACATTCTGCCCTCGATACGCAGCGCTCCGATTCC CCACTTTACAACACATCTGGACGGCGGACGCCCCAGCCGGGCGGCGCTTCCGATCTACTGACTCTGGAACCCTCG AACCCGTCTCCACTCGGCCGCCCCTCCATGCACTCAGATCAGCAACTACTGGTCATGGAGGAAGCCCAGACGAGC AACGCCTATATCCAAGGGCGTGGTGAGGCAATTGATGCGATTGAACGCACCATCAGCGAGCTGGGTGGTATCTTC GGCCAGCTTGCGCAGATGGTCAGCGAGCAGTCCGACATGATCCAGCGGATAGATGCCAACACGGAAGATGTGGTG GATAACGTGCAGGGAGCGCATCGCGAGTTACTGAAGTACTGGACGCGGGTATCCGGGAACCGATGGCTCATCGCC AAGATGTTTGGCGTTCTAATGATCTTCTTCCTACTCTGGGTGTTGATATCGGGATAG |
| Gene | >Ani_SJS72_1|g3192.t1 ATGACCGGCCCGTCCATCCAAGATCGTACCGGCGAGTTCCACGCCATTCTGGGTCAAGCCCAGAAGCGCATGGCC GCCAACAAAGCCAGTTCACAGCGCCAGGCTCTTTTGACAGATGCGCAGCGGAAACAAGCAAACGGTTCCGCAGAC GGGCAGGGTGGCAAACGACGATCGGAGTTTGCCCGGAGAGCTGTGGAAATTGGACGAGGCATCACGGCGACGACT GCGAAGCTGCAGAGACTGGCCGAGTGTGAGTGACTTTTGGACGGTCAGATGAATGGCGCTAATATTATTCGCAGT GGCCAAGCGAAAGACACTCTTTGACGACAGACCGGTTGAGATTTCCGAGTTGACGTTTGTGATCAAACAAGATCT CGCCTCGTTGAATCAGCAAATCGCCTCGTTGCAAGCGCTTACTCTTTCACAACATCCTAAGAGCAATCGGTCGAA GGCGGACCAGGAAGGAGAGCATAATGACAATGTACGTGCGACCAATATAAAGACCGGAATGAAGCTAATGGGTTT AGGTGGTTGTCATGCTACAAGGAAAATTGGCAGATGTGGGAGCCAACTTCAAAGACGTCCTTGAAGTGCGCACAA AGAACATCCAGGCCTCGCGATCCAGAACCGAGAACTTTGTCTCCTCAGTATCCTCAAAGACACATTCTGCCCTCG ATACGCAGCGCTCCGATTCCCCACTTTACAACACATCTGGACGGCGGACGCCCCAGCCGGGCGGCGCTTCCGATC TACTGACTCTGGAACCCTCGAACCCGTCTCCACTCGGCCGCCCCTCCATGCACTCAGATCAGCAACTACTGGTCA TGGAGGAAGCCCAGACGAGCAACGCCTATATCCAAGGGCGTGGTGAGGCAATTGATGCGATTGAACGCACCATCA GCGAGCTGGGTGGTATCTTCGGCCAGCTTGCGCAGATGGTCAGCGAGCAGTCCGACATGATCCAGCGGATAGATG CCAACACGGAAGATGTGGTGGATAACGTGCAGGGAGCGCATCGCGAGTTACTGAAGTACTGGACGCGGGTATCCG GGAACCGATGGCTCATCGCCAAGATGTTTGGCGTTCTAATGGTAAGCTCATCCCGTAACTTGGTGGTCGAATGGC AGCTAACTTGTGCAGATCTTCTTCCTACTCTGGGTGTTGATATCGGGATAG |