© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g3129.t1 |
| Gene name | |
| Location | scaffold_017:91217..91768 |
| Strand | + |
| Gene length (bp) | 551 |
| Transcript length (bp) | 330 |
| Coding sequence length (bp) | 330 |
| Protein length (aa) | 110 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09446 | VMA21 | VMA21-like domain | 3.0E-12 | 38 | 90 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070072 | vacuolar proton-transporting V-type ATPase complex assembly | Yes |
| GO:0009987 | cellular process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0016043 | cellular component organization | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0070071 | proton-transporting two-sector ATPase complex assembly | No |
| GO:0070070 | proton-transporting V-type ATPase complex assembly | No |
| GO:0008150 | biological_process | No |
| GO:0022607 | cellular component assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 42 | 64 | 22 |
| 2 | 68 | 90 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g3129.t1 MATRRSAPKSPSPKDVVASSGSPKPSDSDVTPAVPTNVIMKLLGFSVAMVVIPIGMYFVTVDFGASATVGGIVAA IMANVVLFAYIYVAWKDDQAEREADAKYKEKKAQ* |
| Coding | >Ani_SJS72_1|g3129.t1 ATGGCCACTCGTCGCTCCGCACCGAAATCTCCGTCTCCCAAGGATGTTGTCGCGTCTTCGGGCTCTCCAAAGCCC TCTGACTCAGATGTGACCCCTGCCGTTCCCACAAATGTAATCATGAAACTTCTCGGATTCTCCGTCGCCATGGTC GTCATTCCTATCGGAATGTACTTTGTTACAGTGGACTTTGGAGCAAGCGCCACAGTCGGCGGTATCGTGGCTGCC ATCATGGCGAACGTAGTTCTCTTCGCGTACATCTATGTTGCGTGGAAGGATGATCAGGCGGAGAGGGAAGCTGAC GCTAAGTACAAGGAGAAAAAAGCACAGTGA |
| Transcript | >Ani_SJS72_1|g3129.t1 ATGGCCACTCGTCGCTCCGCACCGAAATCTCCGTCTCCCAAGGATGTTGTCGCGTCTTCGGGCTCTCCAAAGCCC TCTGACTCAGATGTGACCCCTGCCGTTCCCACAAATGTAATCATGAAACTTCTCGGATTCTCCGTCGCCATGGTC GTCATTCCTATCGGAATGTACTTTGTTACAGTGGACTTTGGAGCAAGCGCCACAGTCGGCGGTATCGTGGCTGCC ATCATGGCGAACGTAGTTCTCTTCGCGTACATCTATGTTGCGTGGAAGGATGATCAGGCGGAGAGGGAAGCTGAC GCTAAGTACAAGGAGAAAAAAGCACAGTGA |
| Gene | >Ani_SJS72_1|g3129.t1 ATGGCCACTCGTCGCTCCGCACCGAAATCTCCGTCTCCCAAGGATGTTGTCGCGTCTTCGGGCTCTCCAAAGCCC TCTGACTCAGATGTGACCCCTGCCGTTCCCACGTAGGTGCATCTCATTCGTCCCCTACCAACGAACACTAGGCCA CATGGCGGCTATCCTGAACTACCGGGTTCAGCCCAACGAACGCATACACCTTATCAATACATATCACGCACATAC GCCCCCTCCCTAACTCTGACTAACACATCACTTCCAGAAATGTAATCATGAAACTTCTCGGATTCTCCGTCGCCA TGGTCGTCATTCCTATCGGAATGTACTTTGTTACAGTGGACTTTGGAGGTGAGAATCTCATCCAAACAACCCCCC ATTACTAATGTTCTTATATTAAATGACACATCTGAGCAGCAAGCGCCACAGTCGGCGGTATCGTGGCTGCCATCA TGGCGAACGTAGTTCTCTTCGCGTACATCTATGTTGCGTGGAAGGATGATCAGGCGGAGAGGGAAGCTGACGCTA AGTACAAGGAGAAAAAAGCACAGTGA |