© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g3124.t1 |
| Gene name | |
| Location | scaffold_017:79320..80605 |
| Strand | - |
| Gene length (bp) | 1285 |
| Transcript length (bp) | 1161 |
| Coding sequence length (bp) | 1161 |
| Protein length (aa) | 387 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03908 | Sec20 | Sec20 | 1.3E-17 | 159 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005484 | SNAP receptor activity | Yes |
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Yes |
| GO:0048193 | Golgi vesicle transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0016192 | vesicle-mediated transport | No |
| GO:0003674 | molecular_function | No |
| GO:0060090 | molecular adaptor activity | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0030674 | protein-macromolecule adaptor activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 227 | 249 | 22 |
| 2 | 254 | 276 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g3124.t1 MASIADLQARLKELSTALSHIQPLVSRLKGFTTAVGQGDQPRLELGTEIHTRLKEAEEQLELLKVEVEALEAAAD TRRKGVDNEKESERERVIALAGRLADDLKRTRGDFRNAQLQAKRNAEVARRKERELLFTRSQSAERKKQSSEKLT QDDIVMNASNDVTAALRRTHQLMQAELSRSQFAQETLDQSTAALSSLSESYTDLDSLISSSRNLIGSLLRSQKSD TWYLETAFYILVGTIIWLVFRRILYGPLWWLVWLPLRLFARFTFAILGAVGITSKAVQSSEPSTMLEYVPQETPM VEQKVEPNIQSAEGEAVWDQVPVTDEAEEDRLIDEIGKMVEESEEQEETNIDDISEEERQRQAELPRNPKKRMFE ATDVPQQKDEL* |
| Coding | >Ani_SJS72_1|g3124.t1 ATGGCCAGCATCGCCGATCTACAAGCCCGCTTGAAAGAGCTCTCAACAGCTCTGTCCCACATCCAGCCGCTGGTC TCTCGGTTAAAGGGCTTTACGACTGCAGTTGGACAGGGCGATCAGCCGCGATTGGAACTAGGGACGGAGATCCAT ACTCGACTGAAAGAGGCGGAGGAGCAATTGGAGTTGCTGAAGGTCGAGGTTGAGGCCCTGGAGGCTGCAGCGGAT ACGCGGCGCAAGGGTGTGGATAATGAGAAGGAGTCGGAGAGGGAACGGGTTATTGCCTTGGCTGGACGGTTGGCG GATGATTTGAAGAGAACGAGAGGAGACTTCCGGAACGCACAATTACAAGCGAAGCGGAACGCTGAAGTTGCCCGA CGGAAAGAGCGAGAGCTACTGTTTACGAGGTCACAAAGTGCGGAGAGGAAGAAGCAGTCGAGTGAGAAGCTGACG CAGGATGATATTGTCATGAATGCTTCGAATGATGTTACGGCTGCGCTGAGACGGACGCATCAGTTGATGCAGGCG GAGCTGTCGCGGAGTCAGTTTGCGCAGGAGACGTTAGATCAATCGACTGCTGCGCTGTCCTCGCTGTCAGAATCC TATACAGATCTCGATTCTTTGATTTCGTCGTCACGCAATCTCATCGGGTCTTTGCTACGCTCGCAAAAGTCGGAT ACTTGGTACCTTGAGACGGCTTTCTACATATTGGTTGGCACCATTATTTGGCTTGTCTTCCGGCGGATATTATAT GGTCCCCTGTGGTGGCTCGTCTGGCTGCCTCTCAGGCTGTTCGCGAGGTTCACGTTTGCTATTTTGGGCGCCGTC GGGATTACCAGTAAGGCTGTTCAGTCTTCTGAACCTAGTACGATGCTCGAATATGTGCCGCAAGAGACCCCAATG GTTGAGCAGAAGGTGGAGCCGAACATCCAAAGTGCTGAGGGCGAAGCGGTCTGGGATCAAGTTCCAGTTACGGAT GAGGCAGAGGAGGACCGCTTAATTGATGAGATCGGCAAAATGGTGGAAGAAAGCGAGGAGCAAGAGGAGACCAAC ATTGACGACATCTCAGAAGAGGAAAGGCAAAGGCAGGCGGAGTTGCCCCGGAACCCTAAGAAGAGGATGTTCGAG GCTACGGATGTACCACAGCAGAAGGACGAACTATAG |
| Transcript | >Ani_SJS72_1|g3124.t1 ATGGCCAGCATCGCCGATCTACAAGCCCGCTTGAAAGAGCTCTCAACAGCTCTGTCCCACATCCAGCCGCTGGTC TCTCGGTTAAAGGGCTTTACGACTGCAGTTGGACAGGGCGATCAGCCGCGATTGGAACTAGGGACGGAGATCCAT ACTCGACTGAAAGAGGCGGAGGAGCAATTGGAGTTGCTGAAGGTCGAGGTTGAGGCCCTGGAGGCTGCAGCGGAT ACGCGGCGCAAGGGTGTGGATAATGAGAAGGAGTCGGAGAGGGAACGGGTTATTGCCTTGGCTGGACGGTTGGCG GATGATTTGAAGAGAACGAGAGGAGACTTCCGGAACGCACAATTACAAGCGAAGCGGAACGCTGAAGTTGCCCGA CGGAAAGAGCGAGAGCTACTGTTTACGAGGTCACAAAGTGCGGAGAGGAAGAAGCAGTCGAGTGAGAAGCTGACG CAGGATGATATTGTCATGAATGCTTCGAATGATGTTACGGCTGCGCTGAGACGGACGCATCAGTTGATGCAGGCG GAGCTGTCGCGGAGTCAGTTTGCGCAGGAGACGTTAGATCAATCGACTGCTGCGCTGTCCTCGCTGTCAGAATCC TATACAGATCTCGATTCTTTGATTTCGTCGTCACGCAATCTCATCGGGTCTTTGCTACGCTCGCAAAAGTCGGAT ACTTGGTACCTTGAGACGGCTTTCTACATATTGGTTGGCACCATTATTTGGCTTGTCTTCCGGCGGATATTATAT GGTCCCCTGTGGTGGCTCGTCTGGCTGCCTCTCAGGCTGTTCGCGAGGTTCACGTTTGCTATTTTGGGCGCCGTC GGGATTACCAGTAAGGCTGTTCAGTCTTCTGAACCTAGTACGATGCTCGAATATGTGCCGCAAGAGACCCCAATG GTTGAGCAGAAGGTGGAGCCGAACATCCAAAGTGCTGAGGGCGAAGCGGTCTGGGATCAAGTTCCAGTTACGGAT GAGGCAGAGGAGGACCGCTTAATTGATGAGATCGGCAAAATGGTGGAAGAAAGCGAGGAGCAAGAGGAGACCAAC ATTGACGACATCTCAGAAGAGGAAAGGCAAAGGCAGGCGGAGTTGCCCCGGAACCCTAAGAAGAGGATGTTCGAG GCTACGGATGTACCACAGCAGAAGGACGAACTATAG |
| Gene | >Ani_SJS72_1|g3124.t1 ATGGCCAGCATCGCCGATCTACAAGCCCGCTTGAAAGAGCTCTCAACAGCTCTGTCCCACATCCAGCCGCTGGTC TCTCGGTTAAAGGGCTTTACGACTGCAGTTGGACAGGGCGATCAGCCGCGATTGGAACTAGGGACGGAGATCCAT ACTCGACTGAAAGAGGCGGAGGAGCAATTGGAGTTGCTGAAGGTCGAGGTTGAGGCCCTGGAGGCTGCAGCGGAT ACGCGGCGCAAGGGTGTGGATAATGAGAAGGAGTCGGAGAGGGAACGGGTTATTGCCTTGGCTGGACGGTTGGCG GATGATTTGAAGAGGTAGGTGGAATCGACTGATTGCTCTTCCTGGATTGTTTACTAATGGGTATGTTACGGCTTT GGCAGAACGAGAGGAGACTTCCGGAACGCACAATTACAAGCGAAGCGGAACGCTGAAGTTGCCCGACGGAAAGAG CGAGAGCTACTGTTTACGAGGTCACAAAGTGCGGAGAGGAAGAAGCAGTCGAGTGAGAAGCTGACGCAGGATGAT ATTGTCATGAATGCTTCGAATGATGTTACGGCTGCGCTGAGACGGACGCATCAGTTGATGCAGGCGGAGCTGTCG CGGAGTCAGTTTGCGCAGGAGACGTTAGGTTTGTGCTGGTTTACCTTGGGTGCAGGTCAGGGTAATGGCTAACAT TGGTGGTTTAGATCAATCGACTGCTGCGCTGTCCTCGCTGTCAGAATCCTATACAGATCTCGATTCTTTGATTTC GTCGTCACGCAATCTCATCGGGTCTTTGCTACGCTCGCAAAAGTCGGATACTTGGTACCTTGAGACGGCTTTCTA CATATTGGTTGGCACCATTATTTGGCTTGTCTTCCGGCGGATATTATATGGTCCCCTGTGGTGGCTCGTCTGGCT GCCTCTCAGGCTGTTCGCGAGGTTCACGTTTGCTATTTTGGGCGCCGTCGGGATTACCAGTAAGGCTGTTCAGTC TTCTGAACCTAGTACGATGCTCGAATATGTGCCGCAAGAGACCCCAATGGTTGAGCAGAAGGTGGAGCCGAACAT CCAAAGTGCTGAGGGCGAAGCGGTCTGGGATCAAGTTCCAGTTACGGATGAGGCAGAGGAGGACCGCTTAATTGA TGAGATCGGCAAAATGGTGGAAGAAAGCGAGGAGCAAGAGGAGACCAACATTGACGACATCTCAGAAGAGGAAAG GCAAAGGCAGGCGGAGTTGCCCCGGAACCCTAAGAAGAGGATGTTCGAGGCTACGGATGTACCACAGCAGAAGGA CGAACTATAG |