© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g2940.t1 |
| Gene name | |
| Location | scaffold_015:438374..442408 |
| Strand | + |
| Gene length (bp) | 4034 |
| Transcript length (bp) | 2673 |
| Coding sequence length (bp) | 2673 |
| Protein length (aa) | 891 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.7E-11 | 632 | 702 |
| PF01494 | FAD_binding_3 | FAD binding domain | 1.9E-14 | 6 | 357 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0071949 | FAD binding | Yes |
| GO:0003676 | nucleic acid binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 455 | 477 | 22 |
| 2 | 484 | 503 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g2940.t1 MTADGKIVIVGGGPVGSLAALYASHYHDNVEVYELRGDERQNPAGASPLLQKSINFTLSERGIRALEKSGRTDLL RAIMRTAIPMHGRMVHGRSVSGKLQETFHQYDVHGNSLYSLDRKALNIALRQELDATPNVKMFFHHKLIRADMNT RKVWFEQREGPSTSTSPSTSPTPKEVPFDFLIGADGAHSTTRQQIMRYTPLDYQQQYADTVWCELRIPPTEKTNS FRLRPNYLHIWPGGEYMFCAFPCPDQSFNCILFAPASRLDALKSSPPATLFDFFDTHFPGVCPDLISQSSLSQQF YQSPHLPLIGIKCSPHHLGSAAVIIGDAAHAMFPFYGQGLNAGMEDVRILFDLLDEHRVFGHGKSLDKDHARAAA LTEYSNQRVRDAHAIHDLSRRNYLELRGGVNSPVYKARKFVEEALQRYVPLLGWRTLYSRVSFSDQRYSEVVVKN ELQGWVLLLMSGLGVLLHVLVFGALGVTIATQRLIHLQLFALFAAFALFGFISHQKNVEGNFLTQATASTFFQRW LFCDASFVLFTDYTPPPLTPYSTVTMVDAPESPRPQEQTPQKNVYQNGVRTTGRAFHSPNWRVKREESPSGQNAA AGSPGPKTSTSRLAFSRPSPHVPQAISEGRRLYVGNMPYTAKSEDVQALFDAAEFRIERIDIAIDPFTGRNPSYC FVDLETKELAERAMTELDGRDMLGRPVKIKPGVVKTQSERAQQQQQQQQRSDASPRETRSSPFSMDRWRRGDEAQ PPRTPSKTTTTTTASTPSNSDPSRRLYVGGLPRLTDQEAITSNMTNFFKDYNVENVSKLFAPHPAKRFEPGDHYY LFVDFSSVEEAENAMNALNRAEGPWGAVLRVQRARGENNSQERRPKWSSSRDEATPAAEEVAVAA* |
| Coding | >Ani_SJS72_1|g2940.t1 ATGACTGCAGACGGAAAGATTGTCATCGTTGGCGGTGGGCCAGTGGGCTCCCTGGCAGCCCTCTATGCCAGCCAC TACCATGACAATGTAGAAGTATACGAACTTCGTGGCGATGAGCGGCAGAATCCAGCAGGTGCCTCTCCCCTGCTC CAGAAATCAATCAACTTCACTCTATCTGAGCGGGGCATCAGAGCTCTCGAGAAGTCTGGTCGGACCGACCTACTT CGTGCCATCATGCGGACTGCCATCCCCATGCACGGTAGAATGGTCCACGGAAGAAGCGTCTCAGGAAAACTCCAA GAGACATTCCACCAATACGACGTACACGGGAACTCCCTATACTCCCTGGACCGCAAGGCCCTCAACATAGCCCTC CGTCAAGAGCTCGACGCCACCCCCAACGTCAAGATGTTCTTCCACCACAAGCTCATCCGAGCAGACATGAACACC CGTAAGGTCTGGTTCGAGCAGCGAGAAGGCCCCAGCACCAGCACATCCCCGTCCACCTCACCAACACCAAAAGAA GTTCCCTTCGACTTTCTCATCGGCGCCGACGGCGCCCACTCCACCACCAGACAACAAATAATGCGCTACACCCCC CTAGACTACCAACAACAATACGCCGACACAGTCTGGTGCGAACTGCGCATCCCTCCCACCGAAAAAACCAACTCC TTCCGTCTGCGCCCCAACTACCTCCACATCTGGCCGGGAGGCGAATACATGTTTTGCGCGTTCCCCTGCCCAGAC CAATCCTTCAACTGCATCCTCTTCGCGCCAGCATCCCGGCTCGACGCTCTGAAATCCTCCCCTCCCGCCACCCTC TTCGACTTCTTCGACACCCATTTCCCAGGCGTCTGTCCAGACCTGATCTCCCAGTCCTCCCTCTCCCAACAATTC TACCAAAGCCCGCACCTCCCCCTCATCGGCATAAAATGCAGCCCGCACCACCTTGGCTCAGCGGCCGTCATCATC GGCGATGCCGCACACGCCATGTTCCCGTTCTACGGACAGGGATTGAACGCGGGGATGGAAGATGTGAGGATCCTG TTTGATTTGCTGGACGAGCATCGCGTGTTCGGCCATGGCAAGTCATTGGACAAGGACCATGCCCGCGCTGCTGCG TTAACGGAGTACTCGAACCAGCGGGTTCGCGATGCACATGCTATTCATGACCTCTCGAGGAGGAATTATCTTGAG TTACGCGGTGGGGTTAACTCTCCTGTTTACAAGGCGAGGAAGTTTGTTGAGGAGGCGCTGCAGAGGTATGTGCCC CTATTGGGGTGGAGGACGCTGTATTCGAGGGTTAGCTTTAGTGATCAGCGGTATTCGGAGGTCGTGGTTAAGAAT GAGTTGCAGGGGTGGGTGTTGTTGCTTATGTCTGGGCTGGGGGTGTTGTTGCATGTGCTGGTGTTTGGGGCGTTG GGGGTCACCATAGCGACGCAGAGATTAATCCATCTCCAGCTGTTTGCGCTGTTTGCGGCATTTGCGCTGTTTGGT TTCATTTCGCATCAAAAAAATGTAGAGGGCAATTTTCTGACGCAGGCTACAGCGTCGACGTTTTTTCAACGTTGG CTTTTCTGTGACGCTTCTTTTGTCCTGTTCACCGACTATACCCCTCCACCCCTCACTCCATATTCTACCGTCACA ATGGTCGACGCTCCCGAGAGCCCGAGGCCCCAGGAACAAACTCCCCAAAAGAATGTCTACCAGAATGGGGTGAGA ACCACAGGCCGGGCCTTCCACTCTCCCAACTGGCGTGTGAAGCGCGAAGAGAGCCCTAGTGGGCAGAACGCCGCT GCCGGATCCCCCGGTCCCAAGACAAGCACCTCGAGACTCGCATTCAGCAGACCCAGCCCGCATGTGCCCCAGGCT ATTTCGGAGGGTCGCCGTCTCTATGTGGGCAACATGCCCTACACGGCCAAGTCGGAGGATGTGCAGGCTCTCTTC GATGCGGCTGAGTTCCGAATCGAGCGTATCGACATCGCCATCGATCCTTTCACCGGCCGTAACCCCTCATACTGT TTCGTCGATCTGGAGACCAAGGAGCTGGCTGAGCGCGCCATGACGGAATTGGACGGTCGGGACATGCTTGGTCGT CCCGTCAAGATCAAGCCCGGTGTCGTGAAGACCCAGAGTGAACGGGCTCAGCAACAGCAGCAACAGCAGCAGCGC TCCGATGCCTCCCCTCGTGAGACGCGGTCTTCTCCGTTCAGCATGGACCGTTGGCGCCGCGGTGACGAGGCCCAG CCCCCGCGCACTCCCTCGAAGACCACTACCACCACCACCGCCAGCACCCCCTCAAACAGTGATCCCAGCCGTCGC CTCTATGTTGGCGGCCTGCCGAGGTTGACGGACCAGGAGGCCATCACCAGCAACATGACCAACTTCTTCAAGGAT TACAATGTTGAGAATGTCAGCAAGCTGTTCGCTCCCCACCCCGCGAAGAGGTTCGAGCCCGGTGACCACTACTAC CTGTTCGTCGATTTCAGCAGCGTCGAGGAGGCTGAGAACGCCATGAACGCTCTGAACCGGGCGGAAGGTCCCTGG GGTGCCGTCCTCAGGGTTCAGAGAGCCCGTGGAGAGAACAACTCGCAAGAGCGGAGACCCAAGTGGTCGTCCAGC CGGGACGAAGCCACCCCGGCTGCTGAGGAGGTTGCAGTCGCTGCATAG |
| Transcript | >Ani_SJS72_1|g2940.t1 ATGACTGCAGACGGAAAGATTGTCATCGTTGGCGGTGGGCCAGTGGGCTCCCTGGCAGCCCTCTATGCCAGCCAC TACCATGACAATGTAGAAGTATACGAACTTCGTGGCGATGAGCGGCAGAATCCAGCAGGTGCCTCTCCCCTGCTC CAGAAATCAATCAACTTCACTCTATCTGAGCGGGGCATCAGAGCTCTCGAGAAGTCTGGTCGGACCGACCTACTT CGTGCCATCATGCGGACTGCCATCCCCATGCACGGTAGAATGGTCCACGGAAGAAGCGTCTCAGGAAAACTCCAA GAGACATTCCACCAATACGACGTACACGGGAACTCCCTATACTCCCTGGACCGCAAGGCCCTCAACATAGCCCTC CGTCAAGAGCTCGACGCCACCCCCAACGTCAAGATGTTCTTCCACCACAAGCTCATCCGAGCAGACATGAACACC CGTAAGGTCTGGTTCGAGCAGCGAGAAGGCCCCAGCACCAGCACATCCCCGTCCACCTCACCAACACCAAAAGAA GTTCCCTTCGACTTTCTCATCGGCGCCGACGGCGCCCACTCCACCACCAGACAACAAATAATGCGCTACACCCCC CTAGACTACCAACAACAATACGCCGACACAGTCTGGTGCGAACTGCGCATCCCTCCCACCGAAAAAACCAACTCC TTCCGTCTGCGCCCCAACTACCTCCACATCTGGCCGGGAGGCGAATACATGTTTTGCGCGTTCCCCTGCCCAGAC CAATCCTTCAACTGCATCCTCTTCGCGCCAGCATCCCGGCTCGACGCTCTGAAATCCTCCCCTCCCGCCACCCTC TTCGACTTCTTCGACACCCATTTCCCAGGCGTCTGTCCAGACCTGATCTCCCAGTCCTCCCTCTCCCAACAATTC TACCAAAGCCCGCACCTCCCCCTCATCGGCATAAAATGCAGCCCGCACCACCTTGGCTCAGCGGCCGTCATCATC GGCGATGCCGCACACGCCATGTTCCCGTTCTACGGACAGGGATTGAACGCGGGGATGGAAGATGTGAGGATCCTG TTTGATTTGCTGGACGAGCATCGCGTGTTCGGCCATGGCAAGTCATTGGACAAGGACCATGCCCGCGCTGCTGCG TTAACGGAGTACTCGAACCAGCGGGTTCGCGATGCACATGCTATTCATGACCTCTCGAGGAGGAATTATCTTGAG TTACGCGGTGGGGTTAACTCTCCTGTTTACAAGGCGAGGAAGTTTGTTGAGGAGGCGCTGCAGAGGTATGTGCCC CTATTGGGGTGGAGGACGCTGTATTCGAGGGTTAGCTTTAGTGATCAGCGGTATTCGGAGGTCGTGGTTAAGAAT GAGTTGCAGGGGTGGGTGTTGTTGCTTATGTCTGGGCTGGGGGTGTTGTTGCATGTGCTGGTGTTTGGGGCGTTG GGGGTCACCATAGCGACGCAGAGATTAATCCATCTCCAGCTGTTTGCGCTGTTTGCGGCATTTGCGCTGTTTGGT TTCATTTCGCATCAAAAAAATGTAGAGGGCAATTTTCTGACGCAGGCTACAGCGTCGACGTTTTTTCAACGTTGG CTTTTCTGTGACGCTTCTTTTGTCCTGTTCACCGACTATACCCCTCCACCCCTCACTCCATATTCTACCGTCACA ATGGTCGACGCTCCCGAGAGCCCGAGGCCCCAGGAACAAACTCCCCAAAAGAATGTCTACCAGAATGGGGTGAGA ACCACAGGCCGGGCCTTCCACTCTCCCAACTGGCGTGTGAAGCGCGAAGAGAGCCCTAGTGGGCAGAACGCCGCT GCCGGATCCCCCGGTCCCAAGACAAGCACCTCGAGACTCGCATTCAGCAGACCCAGCCCGCATGTGCCCCAGGCT ATTTCGGAGGGTCGCCGTCTCTATGTGGGCAACATGCCCTACACGGCCAAGTCGGAGGATGTGCAGGCTCTCTTC GATGCGGCTGAGTTCCGAATCGAGCGTATCGACATCGCCATCGATCCTTTCACCGGCCGTAACCCCTCATACTGT TTCGTCGATCTGGAGACCAAGGAGCTGGCTGAGCGCGCCATGACGGAATTGGACGGTCGGGACATGCTTGGTCGT CCCGTCAAGATCAAGCCCGGTGTCGTGAAGACCCAGAGTGAACGGGCTCAGCAACAGCAGCAACAGCAGCAGCGC TCCGATGCCTCCCCTCGTGAGACGCGGTCTTCTCCGTTCAGCATGGACCGTTGGCGCCGCGGTGACGAGGCCCAG CCCCCGCGCACTCCCTCGAAGACCACTACCACCACCACCGCCAGCACCCCCTCAAACAGTGATCCCAGCCGTCGC CTCTATGTTGGCGGCCTGCCGAGGTTGACGGACCAGGAGGCCATCACCAGCAACATGACCAACTTCTTCAAGGAT TACAATGTTGAGAATGTCAGCAAGCTGTTCGCTCCCCACCCCGCGAAGAGGTTCGAGCCCGGTGACCACTACTAC CTGTTCGTCGATTTCAGCAGCGTCGAGGAGGCTGAGAACGCCATGAACGCTCTGAACCGGGCGGAAGGTCCCTGG GGTGCCGTCCTCAGGGTTCAGAGAGCCCGTGGAGAGAACAACTCGCAAGAGCGGAGACCCAAGTGGTCGTCCAGC CGGGACGAAGCCACCCCGGCTGCTGAGGAGGTTGCAGTCGCTGCATAG |
| Gene | >Ani_SJS72_1|g2940.t1 ATGACTGCAGACGGAAAGATTGTCATCGTTGGCGGTGGGCCAGTGGGCTCCCTGGCAGCCCTCTATGCCAGCCAC TACCATGACAATGTAGAAGTATACGAACTTCGTGGCGGTCCGTACTTCCCAACGAGCTCTCATACCCATACATCC AGCTAACTGATTTTTCCCTAGATGAGCGGCAGAATCCAGCAGGTGCCTCTCCCCTGCTCCAGAAATCAATCAACT TCACTCTATCTGAGCGGGGCATCAGAGCTCTCGAGAAGTCTGGTCGGACCGACCTACTTCGTGCCATCATGCGGA CTGCCATCCCCATGCACGGTAGAATGGTCCACGGAAGAAGCGTCTCAGGAAAACTCCAAGAGACATTCCACCAAT ACGACGTACACGGGAACTCCCTATACTCCCTGGACCGCAAGGCCCTCAACATAGCCCTCCGTCAAGAGCTCGACG CCACCCCCAACGTCAAGATGTTCTTCCACCACAAGCTCATCCGAGCAGACATGAACACCCGTAAGGTCTGGTTCG AGCAGCGAGAAGGCCCCAGCACCAGCACATCCCCGTCCACCTCACCAACACCAAAAGAAGTTCCCTTCGACTTTC TCATCGGCGCCGACGGCGCCCACTCCACCACCAGACAACAAATAATGCGCTACACCCCCCTAGACTACCAACAAC AATACGCCGACACAGTCTGGTGCGAACTGCGCATCCCTCCCACCGAAAAAACCAACTCCTTCCGTCTGCGCCCCA ACTACCTCCACATCTGGCCGGGAGGCGAATACATGTTTTGCGCGTTCCCCTGCCCAGACCAATCCTTCAACTGCA TCCTCTTCGCGCCAGCATCCCGGCTCGACGCTCTGAAATCCTCCCCTCCCGCCACCCTCTTCGACTTCTTCGACA CCCATTTCCCAGGCGTCTGTCCAGACCTGATCTCCCAGTCCTCCCTCTCCCAACAATTCTACCAAAGCCCGCACC TCCCCCTCATCGGCATAAAATGCAGCCCGCACCACCTTGGCTCAGCGGCCGTCATCATCGGCGATGCCGCACACG CCATGTTCCCGTTCTACGGACAGGGATTGAACGCGGGGATGGAAGATGTGAGGATCCTGTTTGATTTGCTGGACG AGCATCGCGTGTTCGGCCATGGCAAGTCATTGGACAAGGACCATGCCCGCGCTGCTGCGTTAACGGAGTACTCGA ACCAGCGGGTTCGCGATGCACATGCTATTCATGACCTCTCGAGGAGGAATTATCTTGAGTTACGCGGTGGGGTTA ACTCTCCTGTTTACAAGGCGAGGAAGTTTGTTGAGGAGGCGCTGCAGAGGTATGTGCCCCTATTGGGGTGGAGGA CGCTGTATTCGAGGGTTAGCTTTAGTGATCAGCGGTATTCGGAGGTCGTGGTTAAGAATGAGTTGCAGGGGTGGG TGTTGTTGCTTATGTCTGGGCTGGGGGTGTTGTTGCATGTGCTGGTGTTTGGGGCGTTGGGGGGTGCGTTTTTGG GGTTGAAGAGGTGATGGTTATCATTGTGGTGGATGGTGTGTAAATAGCATGATGTATATGAGTGACGAGGTTTTC TTTGTTCTCTGGTGGTCCTTGAGAATATAAAATTCAACTTTGAATTTAGTATTTATATTATTATATTCATTTGTC TCCTGAGAGTGAATAAGTTGAGTTGGCTCGGGCGTAGTACTCAAGTGTAGGGACTGTTGTTGGCATCGATGAACA ATCAATTAAACCGAGTACTGCTAGGGCTGCTTATCTCAATTAATGGTATCAGGCAAGGACAGTAATATAACTACT ATTTGCCCTCTATTGGATCTCTAAAGCAGATAGATCGTCGTGGAGAACCCGCATGTCATGTGCCATATGTTACCA CGTGCAATGCACATACAAAATACCATACAAGTCTCTAAAGTGATGAGTGCATGTTTTTTACTAAGCATTTACAAC ATGGAATCAATTTCACGAGTATAGGTATCATTTCTCTTTTTGAAATCTATCTTGGATAAGTGCAAGGGGATACAA GTCATCACATCGTCAGACAGCAGTTGGAACGATTGTTGATCCGCATGTTTTATAAACTCGGAACAGGTCTGTGTG AAATCTTGCTTCATCATTGAAGGATGACTTGTATGGGTGTGGAACGCTGCAAATGAAAAAACATGCAATAAACAA AATGGAAAATTGAATATTGGCGACATTTTTGCAAGTCTGCTGAGCAGCTGACGGAATGCATTAATCCCGTGGCTT GAGAGCTGTCAGATGACTGTTTCTTAAACAGTCACCATAGCGAGTAACATAGATATCTGAGTTGATTCAATCCCG CTGCAGGGAAGAATATTAACGCTGTTAGGAAGAAGGAATGAGAAGAAAACAAAGGGCGGCTTTATATGATGAAAA TCTCCCCCGGTTCGCTAACAGGCCAATCATCGGCAGCGCAGAGATTAATCCATCTCCAGCTGTTTGCGCTGTTTG CGGCATTTGCGCTGTTTGGTTTCATTTCGCATCAAAAAAATGTAGAGGGCAATTTTCTGACGCAGGCTACAGCGT CGACGTTTTTTCAGTGTTGACTTTCACTCTTTTTGTTGTTCGGGGGTTTTATCTTGCCTTGGGAATTTTCTGGAA GGCAGACGTTGGCTTTTCTGTGACGCTTCTTTTGTCCTGTTCACCGGTATGAATCCCCTCTCTTCATGATCGTGA TCGTCTCTGTCCGATTAGGAAATAAGTAAATTCTGTGTCAATCCATACTAACGAACTTTGGATCGATAGACTATA CCCCTCCACCCCTCACTCCATATTCTACCGTCACAATGGTCGACGCTCCCGAGAGCCCGAGGCCCCAGGAACAAA GTGTGTAGGCGATCGCATTGGGCTGCTCATCTGGGGCTGGATCCAATTTTTTCAAGGCCATGTCCTAAATCGCTA ATGCGTGCCTAGCTCCCCAAAAGAATGTCTACCAGAATGGGGTGAGAACCACAGGCCGGGCCTTCCACTCTCCCA ACTGGCGTGTGAAGCGCGAAGAGAGCCCTAGTGGGCAGAACGCCGCTGCCGGATCCCCCGGTCCCAAGACAAGCA CCTCGAGACTCGCATTCAGCAGACCCAGCCCGCATGTGCCCCAGGCTATTTCGGAGGGTCGCCGTCTCTATGTGG GCAACATGCCCTACACGGCCAAGTCGGAGGATGTGCAGGCTCTCTTCGATGCGGCTGAGTTCCGAATGTATGGAT TCTTTGAACTGAAGACAACCGTGGGAGTTCCAAACTGAGTGCTTAATAGCGAGCGTATCGACATCGCCATCGATC CTTTCACCGGCCGTAACCCCTCATACTGTTTCGTCGATCTGGAGACCAAGGAGCTGGCTGAGCGCGCCATGACGG AATTGGACGGTCGGGACATGCTTGGTCGTCCCGTCAAGATCAAGCCCGGTGTCGTGAAGACCCAGAGTGAACGGG CTCAGCAACAGCAGCAACAGCAGCAGCGCTCCGATGCCTCCCCTCGTGAGACGCGGTCTTCTCCGTTCAGCATGG ACCGTTGGCGCCGCGGTGACGAGGCCCAGCCCCCGCGCACTCCCTCGAAGACCACTACCACCACCACCGCCAGCA CCCCCTCAAACAGTGATCCCAGCCGTCGCCTCTATGTTGGCGGCCTGCCGAGGTTGACGGACCAGGAGGCCATCA CCAGCAACATGACCAACTTCTTCAAGGATTACAATGTGTATGGATCAGTCTTGAGTGCGTTGATTGTTCGGGATA TGCTAACCTGGCTGTATAGTGAGAATGTCAGCAAGCTGTTCGCTCCCCACCCCGCGAAGAGGTTCGAGCCCGGTG ACCACTACTACCTGTTCGTCGATTTCAGCAGCGTCGAGGAGGCTGAGAACGCCATGAACGCTCTGAACCGGGCGG AAGGTCCCTGGGGTGCCGTCCTCAGGGTTCAGAGAGCCCGTGGAGAGAACAACTCGCAAGAGCGGAGACCCAAGT GGTCGTCCAGCCGGGACGAAGCCACCCCGGCTGCTGAGGAGGTTGCAGTCGCTGCATAG |