© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g2935.t1 |
| Gene name | |
| Location | scaffold_015:425385..426415 |
| Strand | + |
| Gene length (bp) | 1030 |
| Transcript length (bp) | 972 |
| Coding sequence length (bp) | 972 |
| Protein length (aa) | 324 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12906 | RINGv | RING-variant domain | 2.9E-08 | 91 | 136 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0046872 | metal ion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 162 | 184 | 22 |
| 2 | 220 | 242 | 22 |
| 3 | 262 | 281 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g2935.t1 MDLRNEPLWQWPSSSASVSASDPDFDVRQSPEDVAGPDGSSQPSGETFEKHYPPRTCRICLETVYPTFPPPSEHL PGFLQSKQRVTYQSSDPESGRLLRPCKCKGSSRYVHEGCLQLWRHADPGYGKRNYWHCPTCGFHYRLERLRWAHW ISSPLTQLGLTLIILMLTVFLLGFIADPIINLYVDPMDPIIRSDYWDTRPVASILPDNEEASWTEHFIKGLASLG FLSFIKAVFALSSWHGLTLRGTGMFGGGRNSGRNRVAWLVIVIGVGSFLWAVYKGVRTWSCRALEKAGQRVMDVP LPDDEDEDDKASAEKSDESKKED* |
| Coding | >Ani_SJS72_1|g2935.t1 ATGGACCTGCGCAATGAGCCGCTCTGGCAGTGGCCTTCTAGCTCTGCCTCCGTCTCAGCCTCGGACCCTGACTTT GATGTAAGGCAGAGTCCGGAAGATGTTGCTGGACCTGATGGCTCTTCGCAACCTTCAGGCGAGACTTTCGAAAAG CATTACCCTCCTCGTACATGTCGCATTTGCCTGGAGACCGTCTACCCTACTTTCCCTCCTCCATCCGAACACCTG CCTGGGTTTCTTCAGTCCAAGCAACGCGTGACATACCAGTCCTCAGACCCGGAGTCTGGTCGATTGCTTCGCCCT TGCAAATGCAAAGGATCCTCGCGTTATGTGCATGAGGGATGTTTACAACTTTGGCGACACGCGGACCCAGGTTAT GGCAAGAGGAATTATTGGCACTGTCCGACTTGTGGTTTCCACTATCGCTTAGAGCGCCTCCGGTGGGCACACTGG ATCAGTAGCCCATTGACGCAGCTTGGACTCACCCTAATAATTCTAATGTTGACTGTATTTTTACTTGGTTTTATT GCTGACCCGATCATTAATTTATACGTGGACCCTATGGACCCCATTATCCGCTCGGACTACTGGGATACGCGTCCT GTGGCGAGTATCTTACCTGACAACGAAGAGGCTTCCTGGACTGAGCACTTCATCAAGGGGCTAGCCTCTTTGGGA TTTCTGTCTTTCATCAAGGCCGTGTTTGCGCTTTCTTCATGGCACGGATTGACACTGCGCGGCACAGGGATGTTT GGTGGCGGAAGGAATTCTGGCCGCAACCGGGTCGCGTGGCTTGTCATCGTCATCGGTGTTGGTAGTTTTCTTTGG GCTGTTTACAAAGGTGTAAGAACATGGAGCTGCAGGGCTTTAGAAAAAGCCGGACAGCGAGTCATGGATGTTCCG TTGCCTGATGACGAGGATGAAGATGATAAAGCCTCCGCGGAAAAGTCCGATGAAAGTAAGAAGGAAGATTGA |
| Transcript | >Ani_SJS72_1|g2935.t1 ATGGACCTGCGCAATGAGCCGCTCTGGCAGTGGCCTTCTAGCTCTGCCTCCGTCTCAGCCTCGGACCCTGACTTT GATGTAAGGCAGAGTCCGGAAGATGTTGCTGGACCTGATGGCTCTTCGCAACCTTCAGGCGAGACTTTCGAAAAG CATTACCCTCCTCGTACATGTCGCATTTGCCTGGAGACCGTCTACCCTACTTTCCCTCCTCCATCCGAACACCTG CCTGGGTTTCTTCAGTCCAAGCAACGCGTGACATACCAGTCCTCAGACCCGGAGTCTGGTCGATTGCTTCGCCCT TGCAAATGCAAAGGATCCTCGCGTTATGTGCATGAGGGATGTTTACAACTTTGGCGACACGCGGACCCAGGTTAT GGCAAGAGGAATTATTGGCACTGTCCGACTTGTGGTTTCCACTATCGCTTAGAGCGCCTCCGGTGGGCACACTGG ATCAGTAGCCCATTGACGCAGCTTGGACTCACCCTAATAATTCTAATGTTGACTGTATTTTTACTTGGTTTTATT GCTGACCCGATCATTAATTTATACGTGGACCCTATGGACCCCATTATCCGCTCGGACTACTGGGATACGCGTCCT GTGGCGAGTATCTTACCTGACAACGAAGAGGCTTCCTGGACTGAGCACTTCATCAAGGGGCTAGCCTCTTTGGGA TTTCTGTCTTTCATCAAGGCCGTGTTTGCGCTTTCTTCATGGCACGGATTGACACTGCGCGGCACAGGGATGTTT GGTGGCGGAAGGAATTCTGGCCGCAACCGGGTCGCGTGGCTTGTCATCGTCATCGGTGTTGGTAGTTTTCTTTGG GCTGTTTACAAAGGTGTAAGAACATGGAGCTGCAGGGCTTTAGAAAAAGCCGGACAGCGAGTCATGGATGTTCCG TTGCCTGATGACGAGGATGAAGATGATAAAGCCTCCGCGGAAAAGTCCGATGAAAGTAAGAAGGAAGATTGA |
| Gene | >Ani_SJS72_1|g2935.t1 ATGGACCTGCGCAATGAGCCGCTCTGGCAGTGGCCTTCTAGCTCTGCCTCCGTCTCAGCCTCGGACCCTGACTTT GATGTAAGGCAGAGTCCGGAAGATGTTGCTGGACCTGATGGCTCTTCGCAACCTTCAGGCGAGACTTTCGAAAAG CATTACCCTCCTCGTACATGTCGCATTTGCCTGGAGACCGTCTACCCTACTTTCCCTCCTCCATCCGAACACCTG CCTGGGTTTCTTCAGTCCAAGCAACGCGTGACATACCAGTCCTCAGACCCGGAGTCTGGTCGATTGCTTCGCCCT TGCAAATGCAAAGGATCCTCGCGTTATGTGCATGAGGGATGTTTACAACTTTGGCGACACGCGGACCCAGGTTAT GGCAAGAGGAATTATTGGCACTGTCCGACTTGTGGTTTCCACTATCGCTTAGAGCGCCTCCGGTGGGCACACTGG ATCAGTAGCCCATTGACGCAGCTTGGACTCACCCTAATAATTCTAATGTTGACTGTATTTTTACTTGGTTTTATT GCTGACCCGATCATTAATTTATACGTGGACCCTATGGACCCCATTATCCGCTCGGACTACTGGGATACGCGTCCT GTGGCGAGTATCTTACCTGACAACGAAGAGGCTTCCTGGACTGAGCACTTCATCAAGGGGCTAGCCTCTTTGGGA TTTCTGTCTTTCATCAAGGCCGTGTTTGCGCTTTCTTCATGGCACGGATTGACACTGCGCGGCACAGGGATGTTT GGTGGCGGAAGGAATTCTGGCCGCAACCGGGTCGCGTGGCTTGTCATCGTCATCGGTGTTGGTAGTTTTCTTTGG GTATGTTCACAACCTATAATTCTTTTATTTATTGGCAACTTCTGACCGCAAATATTAGGCTGTTTACAAAGGTGT AAGAACATGGAGCTGCAGGGCTTTAGAAAAAGCCGGACAGCGAGTCATGGATGTTCCGTTGCCTGATGACGAGGA TGAAGATGATAAAGCCTCCGCGGAAAAGTCCGATGAAAGTAAGAAGGAAGATTGA |