© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g2885.t1 |
| Gene name | |
| Location | scaffold_015:284422..285812 |
| Strand | - |
| Gene length (bp) | 1390 |
| Transcript length (bp) | 1245 |
| Coding sequence length (bp) | 1245 |
| Protein length (aa) | 415 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01494 | FAD_binding_3 | FAD binding domain | 1.6E-25 | 11 | 371 |
| PF05834 | Lycopene_cycl | Lycopene cyclase protein | 6.1E-06 | 13 | 174 |
| PF00890 | FAD_binding_2 | FAD binding domain | 5.6E-05 | 13 | 67 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0071949 | FAD binding | Yes |
| GO:0000166 | nucleotide binding | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g2885.t1 MMAPPEPKLSTTVLVVGAGSTGLALAQGLKKAGIPTIVVEKHDSLDAHNRDWNMGLHWGAGPLQALLPEEQWSRI QSVQVDPNEPTAEQDALNFLNGQSGEAMASIPARLFYRLRRRKLRGLMEPGLDIRYGQKLQDIQCSADGEHATAM FEDGSSISASIIVGADGARSTTRHVLLGPNRGEVRRLPYCATFIQAQYSAERARYLRQFHPLYIAGINPAGYFSF FGLHDATDRERPDTWTFFFYISWHSSLQEQRETAGWSNAQRLEQVKKFAKTYTDPWKSAFEWLPDDQQVWHMGLS DFDPREKSHRWDNRGGRVTLAGDAAHAMTYQRGQGLNHSITDAANLVEAVRRFVSGEATRADAIREYEDEMISRA GSEVGLSTVNTAMLHDWHKVLQSPVMTSGMKRSTEIIAN* |
| Coding | >Ani_SJS72_1|g2885.t1 ATGATGGCACCCCCGGAGCCGAAACTCTCGACCACGGTTCTCGTTGTGGGCGCAGGTTCAACTGGACTTGCTTTG GCTCAGGGGTTGAAAAAGGCTGGGATTCCTACTATTGTGGTAGAAAAACATGACAGCTTAGATGCACATAACCGT GACTGGAACATGGGCTTGCACTGGGGCGCAGGCCCTTTGCAAGCTCTCTTACCAGAAGAGCAATGGTCACGAATC CAGTCAGTCCAAGTCGATCCTAATGAGCCTACAGCAGAACAAGATGCTCTCAACTTCCTCAACGGACAGTCCGGA GAGGCCATGGCTTCCATCCCTGCGCGTCTTTTCTATCGGTTGCGTCGTCGGAAACTCCGAGGCCTGATGGAACCA GGCTTAGACATTCGGTATGGCCAAAAGCTACAGGACATTCAGTGTTCTGCCGACGGCGAACATGCCACTGCCATG TTCGAAGATGGCTCGTCCATTTCAGCTAGCATTATAGTGGGCGCTGATGGAGCTCGCTCGACGACACGACACGTC TTGCTAGGACCTAACAGAGGGGAGGTCCGCCGGCTTCCTTACTGCGCAACCTTTATCCAGGCCCAATACTCCGCA GAGCGTGCTCGCTACTTACGACAGTTCCACCCTCTTTACATCGCTGGAATTAATCCTGCGGGGTATTTCTCTTTC TTCGGCCTACACGACGCAACAGATCGCGAGAGACCAGACACTTGGACTTTCTTCTTCTACATATCATGGCATTCC TCCCTGCAGGAGCAACGGGAGACAGCTGGTTGGAGTAACGCACAAAGGCTTGAGCAAGTCAAGAAGTTTGCCAAG ACTTACACTGATCCTTGGAAGAGCGCGTTTGAATGGCTGCCGGATGACCAGCAAGTCTGGCACATGGGCCTGAGC GACTTTGACCCACGCGAAAAATCCCATAGGTGGGATAACCGAGGGGGGCGGGTCACATTGGCTGGTGATGCAGCA CACGCCATGACATATCAACGTGGTCAGGGCTTGAACCATTCCATTACCGACGCAGCCAATTTGGTGGAAGCAGTG CGACGGTTTGTCTCTGGAGAGGCAACGCGGGCTGACGCTATAAGGGAGTATGAAGATGAGATGATTTCCCGCGCG GGGAGTGAAGTTGGCCTGTCTACTGTCAACACGGCAATGCTGCATGACTGGCACAAGGTGTTACAGTCACCGGTA ATGACATCCGGCATGAAACGGTCAACTGAAATTATAGCCAATTGA |
| Transcript | >Ani_SJS72_1|g2885.t1 ATGATGGCACCCCCGGAGCCGAAACTCTCGACCACGGTTCTCGTTGTGGGCGCAGGTTCAACTGGACTTGCTTTG GCTCAGGGGTTGAAAAAGGCTGGGATTCCTACTATTGTGGTAGAAAAACATGACAGCTTAGATGCACATAACCGT GACTGGAACATGGGCTTGCACTGGGGCGCAGGCCCTTTGCAAGCTCTCTTACCAGAAGAGCAATGGTCACGAATC CAGTCAGTCCAAGTCGATCCTAATGAGCCTACAGCAGAACAAGATGCTCTCAACTTCCTCAACGGACAGTCCGGA GAGGCCATGGCTTCCATCCCTGCGCGTCTTTTCTATCGGTTGCGTCGTCGGAAACTCCGAGGCCTGATGGAACCA GGCTTAGACATTCGGTATGGCCAAAAGCTACAGGACATTCAGTGTTCTGCCGACGGCGAACATGCCACTGCCATG TTCGAAGATGGCTCGTCCATTTCAGCTAGCATTATAGTGGGCGCTGATGGAGCTCGCTCGACGACACGACACGTC TTGCTAGGACCTAACAGAGGGGAGGTCCGCCGGCTTCCTTACTGCGCAACCTTTATCCAGGCCCAATACTCCGCA GAGCGTGCTCGCTACTTACGACAGTTCCACCCTCTTTACATCGCTGGAATTAATCCTGCGGGGTATTTCTCTTTC TTCGGCCTACACGACGCAACAGATCGCGAGAGACCAGACACTTGGACTTTCTTCTTCTACATATCATGGCATTCC TCCCTGCAGGAGCAACGGGAGACAGCTGGTTGGAGTAACGCACAAAGGCTTGAGCAAGTCAAGAAGTTTGCCAAG ACTTACACTGATCCTTGGAAGAGCGCGTTTGAATGGCTGCCGGATGACCAGCAAGTCTGGCACATGGGCCTGAGC GACTTTGACCCACGCGAAAAATCCCATAGGTGGGATAACCGAGGGGGGCGGGTCACATTGGCTGGTGATGCAGCA CACGCCATGACATATCAACGTGGTCAGGGCTTGAACCATTCCATTACCGACGCAGCCAATTTGGTGGAAGCAGTG CGACGGTTTGTCTCTGGAGAGGCAACGCGGGCTGACGCTATAAGGGAGTATGAAGATGAGATGATTTCCCGCGCG GGGAGTGAAGTTGGCCTGTCTACTGTCAACACGGCAATGCTGCATGACTGGCACAAGGTGTTACAGTCACCGGTA ATGACATCCGGCATGAAACGGTCAACTGAAATTATAGCCAATTGA |
| Gene | >Ani_SJS72_1|g2885.t1 ATGATGGCACCCCCGGAGCCGAAACTCTCGACCACGGTTCTCGTTGTGGGCGCAGGTAAGGCTTTGGTAGTCGCG TGGGACTTTCAACCTCACGATGAAGCCTTGCACCAAGGATCCGGACACATAACGCTGATTGATTATGATTAGGTT CAACTGGACTTGCTTTGGCTCAGGGGTTGAAAAAGGTAGTTATAACACCTACTTCTGTATTTCTCCTAGCTGAAC ACTTTCCGTTTAGGCTGGGATTCCTACTATTGTGGTAGAAAAACATGACAGCTTAGATGCACATAACCGTGACTG GAACATGGGCTTGCACTGGGGCGCAGGCCCTTTGCAAGCTCTCTTACCAGAAGAGCAATGGTCACGAATCCAGTC AGTCCAAGTCGATCCTAATGAGCCTACAGCAGAACAAGATGCTCTCAACTTCCTCAACGGACAGTCCGGAGAGGC CATGGCTTCCATCCCTGCGCGTCTTTTCTATCGGTTGCGTCGTCGGAAACTCCGAGGCCTGATGGAACCAGGCTT AGACATTCGGTATGGCCAAAAGCTACAGGACATTCAGTGTTCTGCCGACGGCGAACATGCCACTGCCATGTTCGA AGATGGCTCGTCCATTTCAGCTAGCATTATAGTGGGCGCTGATGGAGCTCGCTCGACGACACGACACGTCTTGCT AGGACCTAACAGAGGGGAGGTCCGCCGGCTTCCTTACTGCGCAACCTTTATCCAGGCCCAATACTCCGCAGAGCG TGCTCGCTACTTACGACAGTTCCACCCTCTTTACATCGCTGGAATTAATCCTGCGGGGTATTTCTCTTTCTTCGG CCTACACGACGCAACAGATCGCGAGAGACCAGACACTTGGACTTTCTTCTTCTACATATCATGGCATTCCTCCCT GCAGGAGCAACGGGAGACAGCTGGTTGGAGTAACGCACAAAGGCTTGAGCAAGTCAAGAAGTTTGCCAAGACTTA CACTGATCCTTGGAAGAGCGCGTTTGAATGGCTGCCGGATGACCAGCAAGTCTGGCACATGGGCCTGAGCGACTT TGACCCACGCGAAAAATCCCATAGGTGGGATAACCGAGGGGGGCGGGTCACATTGGCTGGTGATGCAGCACACGC CATGACATATCAACGTGGTCAGGGCTTGAACCATTCCATTACCGACGCAGCCAATTTGGTGGAAGCAGTGCGACG GTTTGTCTCTGGAGAGGCAACGCGGGCTGACGCTATAAGGGAGTATGAAGATGAGATGATTTCCCGCGCGGGGAG TGAAGTTGGCCTGTCTACTGTCAACACGGCAATGCTGCATGACTGGCACAAGGTGTTACAGTCACCGGTAATGAC ATCCGGCATGAAACGGTCAACTGAAATTATAGCCAATTGA |