Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS72_1|g2860.t1
Gene name
Locationscaffold_015:219169..219850
Strand+
Gene length (bp)681
Transcript length (bp)681
Coding sequence length (bp)681
Protein length (aa) 227

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 1.2E-03 34 66
PF01476 LysM LysM domain 4.1E-04 113 156

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS72_1|g2860.t1
MHFLTLAALPFLASAASAAPTCNRSNLNSTVGLYTVQDGDTIASVSNSVNRGICDIARLNRMADAMIPFLTGEQL
LIPPETCTPDNSTCLLFPSPTDNYADCVSGGPHTYYTVKGDTIRTIALRLNITVEALSATAQGGVSDPDALVQVD
NELKVPQCSPSVCEVEPYHFTYGTYKDLADKIGSTVGQIMAFNPTYNHSDVARGQGAVVTLPKNCRNLGDNVTVI
S*
Coding >Ani_SJS72_1|g2860.t1
ATGCACTTCCTAACTCTTGCAGCATTGCCCTTCCTTGCCTCGGCAGCCTCAGCAGCACCTACATGCAACCGCTCC
AACCTGAACAGCACCGTCGGTCTCTACACCGTCCAAGACGGCGACACCATTGCCAGCGTCTCCAACTCCGTAAAC
CGCGGCATCTGCGACATCGCCCGACTCAACCGCATGGCGGATGCCATGATCCCCTTCTTGACGGGAGAACAGCTG
CTCATCCCTCCGGAGACCTGCACTCCCGACAACTCCACCTGTCTGCTATTCCCTAGCCCCACTGACAACTACGCC
GACTGCGTGTCCGGCGGTCCTCACACCTACTACACCGTCAAGGGGGACACCATCCGCACCATCGCGCTGAGATTG
AACATCACTGTCGAAGCCCTTTCCGCAACCGCTCAGGGTGGGGTTAGTGATCCTGATGCACTGGTCCAGGTGGAC
AATGAGTTGAAGGTCCCTCAGTGCAGTCCTAGTGTGTGTGAGGTTGAGCCGTATCACTTCACTTATGGCACGTAC
AAGGATTTGGCCGACAAGATTGGCTCCACTGTGGGCCAAATTATGGCGTTTAACCCGACTTATAATCACTCGGAT
GTGGCCAGGGGTCAGGGTGCCGTCGTGACTTTGCCTAAGAACTGCAGGAACTTGGGTGATAATGTTACTGTTATC
TCTTAG
Transcript >Ani_SJS72_1|g2860.t1
ATGCACTTCCTAACTCTTGCAGCATTGCCCTTCCTTGCCTCGGCAGCCTCAGCAGCACCTACATGCAACCGCTCC
AACCTGAACAGCACCGTCGGTCTCTACACCGTCCAAGACGGCGACACCATTGCCAGCGTCTCCAACTCCGTAAAC
CGCGGCATCTGCGACATCGCCCGACTCAACCGCATGGCGGATGCCATGATCCCCTTCTTGACGGGAGAACAGCTG
CTCATCCCTCCGGAGACCTGCACTCCCGACAACTCCACCTGTCTGCTATTCCCTAGCCCCACTGACAACTACGCC
GACTGCGTGTCCGGCGGTCCTCACACCTACTACACCGTCAAGGGGGACACCATCCGCACCATCGCGCTGAGATTG
AACATCACTGTCGAAGCCCTTTCCGCAACCGCTCAGGGTGGGGTTAGTGATCCTGATGCACTGGTCCAGGTGGAC
AATGAGTTGAAGGTCCCTCAGTGCAGTCCTAGTGTGTGTGAGGTTGAGCCGTATCACTTCACTTATGGCACGTAC
AAGGATTTGGCCGACAAGATTGGCTCCACTGTGGGCCAAATTATGGCGTTTAACCCGACTTATAATCACTCGGAT
GTGGCCAGGGGTCAGGGTGCCGTCGTGACTTTGCCTAAGAACTGCAGGAACTTGGGTGATAATGTTACTGTTATC
TCTTAG
Gene >Ani_SJS72_1|g2860.t1
ATGCACTTCCTAACTCTTGCAGCATTGCCCTTCCTTGCCTCGGCAGCCTCAGCAGCACCTACATGCAACCGCTCC
AACCTGAACAGCACCGTCGGTCTCTACACCGTCCAAGACGGCGACACCATTGCCAGCGTCTCCAACTCCGTAAAC
CGCGGCATCTGCGACATCGCCCGACTCAACCGCATGGCGGATGCCATGATCCCCTTCTTGACGGGAGAACAGCTG
CTCATCCCTCCGGAGACCTGCACTCCCGACAACTCCACCTGTCTGCTATTCCCTAGCCCCACTGACAACTACGCC
GACTGCGTGTCCGGCGGTCCTCACACCTACTACACCGTCAAGGGGGACACCATCCGCACCATCGCGCTGAGATTG
AACATCACTGTCGAAGCCCTTTCCGCAACCGCTCAGGGTGGGGTTAGTGATCCTGATGCACTGGTCCAGGTGGAC
AATGAGTTGAAGGTCCCTCAGTGCAGTCCTAGTGTGTGTGAGGTTGAGCCGTATCACTTCACTTATGGCACGTAC
AAGGATTTGGCCGACAAGATTGGCTCCACTGTGGGCCAAATTATGGCGTTTAACCCGACTTATAATCACTCGGAT
GTGGCCAGGGGTCAGGGTGCCGTCGTGACTTTGCCTAAGAACTGCAGGAACTTGGGTGATAATGTTACTGTTATC
TCTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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