© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g2720.t1 |
| Gene name | |
| Location | scaffold_014:223602..224632 |
| Strand | + |
| Gene length (bp) | 1030 |
| Transcript length (bp) | 957 |
| Coding sequence length (bp) | 957 |
| Protein length (aa) | 319 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02678 | Pirin | Pirin | 2.4E-23 | 52 | 166 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g2720.t1 MQIATPSYLFLFFVPLILLLIKAILPTNSVMSKPLAHASIVARRSSERGYAEHGGWLKSFHTFSFANYYDHRFNN FGSLRVLNEDRVAARNGFPTHPHRDAEIFSYILNGELTHRDSMIKKGAEGAQGKQFYRMKRGDVQFTTGGTGIAH SEQNESNKPVHFLQIWALPWKHGLKPQYHTRTFDEAAKRKAFVPILSPLAAGPEATPADEEAAIPKIPDTIPIHA DFVMGAGIIEPGQKFQWTVGAGEDVVSRKKKRNVYVHLPMTKNGQAKIRLDHRDEAVFSEGDGAFITGVNAGDVL SVESVGDAEAEVVVLDSD* |
| Coding | >Ani_SJS72_1|g2720.t1 ATGCAAATTGCAACACCATCCTATCTCTTCCTATTCTTTGTTCCTTTAATACTGCTCCTCATCAAGGCAATTCTT CCCACCAACTCCGTTATGTCCAAGCCTCTTGCACACGCTTCCATTGTCGCCCGTCGCTCCAGTGAGCGCGGGTAC GCCGAACACGGCGGCTGGCTCAAAAGCTTTCACACCTTCAGTTTTGCCAACTACTATGATCATCGCTTCAACAAC TTTGGCAGTCTGCGCGTTCTCAACGAAGACCGTGTAGCCGCCCGTAATGGATTCCCGACCCACCCTCACCGTGAT GCCGAAATCTTCAGCTACATTCTCAACGGAGAACTCACGCACCGTGATAGCATGATCAAAAAGGGTGCGGAAGGC GCACAGGGCAAGCAATTTTACCGTATGAAGCGTGGTGACGTTCAGTTCACCACTGGTGGAACAGGAATCGCACAC TCCGAACAAAACGAATCCAACAAGCCTGTCCACTTCCTCCAGATCTGGGCTCTTCCCTGGAAACATGGCCTCAAG CCCCAATACCACACCCGCACGTTCGACGAAGCCGCTAAACGCAAAGCATTCGTCCCTATCCTCTCCCCGCTGGCT GCTGGGCCCGAAGCAACCCCGGCTGATGAGGAAGCCGCCATTCCTAAGATCCCAGACACGATCCCAATTCACGCA GACTTTGTGATGGGCGCGGGAATCATTGAACCCGGGCAGAAGTTCCAGTGGACTGTTGGTGCTGGCGAAGACGTG GTCAGCCGGAAGAAGAAGAGGAACGTCTATGTGCATTTGCCCATGACGAAGAACGGCCAGGCCAAGATCCGATTG GATCATCGGGACGAAGCGGTTTTCAGTGAGGGCGATGGAGCGTTTATCACAGGGGTGAATGCGGGTGATGTGCTG AGTGTGGAGAGTGTTGGAGATGCTGAGGCCGAGGTTGTGGTTTTGGACAGTGACTAG |
| Transcript | >Ani_SJS72_1|g2720.t1 ATGCAAATTGCAACACCATCCTATCTCTTCCTATTCTTTGTTCCTTTAATACTGCTCCTCATCAAGGCAATTCTT CCCACCAACTCCGTTATGTCCAAGCCTCTTGCACACGCTTCCATTGTCGCCCGTCGCTCCAGTGAGCGCGGGTAC GCCGAACACGGCGGCTGGCTCAAAAGCTTTCACACCTTCAGTTTTGCCAACTACTATGATCATCGCTTCAACAAC TTTGGCAGTCTGCGCGTTCTCAACGAAGACCGTGTAGCCGCCCGTAATGGATTCCCGACCCACCCTCACCGTGAT GCCGAAATCTTCAGCTACATTCTCAACGGAGAACTCACGCACCGTGATAGCATGATCAAAAAGGGTGCGGAAGGC GCACAGGGCAAGCAATTTTACCGTATGAAGCGTGGTGACGTTCAGTTCACCACTGGTGGAACAGGAATCGCACAC TCCGAACAAAACGAATCCAACAAGCCTGTCCACTTCCTCCAGATCTGGGCTCTTCCCTGGAAACATGGCCTCAAG CCCCAATACCACACCCGCACGTTCGACGAAGCCGCTAAACGCAAAGCATTCGTCCCTATCCTCTCCCCGCTGGCT GCTGGGCCCGAAGCAACCCCGGCTGATGAGGAAGCCGCCATTCCTAAGATCCCAGACACGATCCCAATTCACGCA GACTTTGTGATGGGCGCGGGAATCATTGAACCCGGGCAGAAGTTCCAGTGGACTGTTGGTGCTGGCGAAGACGTG GTCAGCCGGAAGAAGAAGAGGAACGTCTATGTGCATTTGCCCATGACGAAGAACGGCCAGGCCAAGATCCGATTG GATCATCGGGACGAAGCGGTTTTCAGTGAGGGCGATGGAGCGTTTATCACAGGGGTGAATGCGGGTGATGTGCTG AGTGTGGAGAGTGTTGGAGATGCTGAGGCCGAGGTTGTGGTTTTGGACAGTGACTAG |
| Gene | >Ani_SJS72_1|g2720.t1 ATGCAAATTGCAACACCATCCTATCTCTTCCTATTCTTTGTTCCTTTAATACTGCTCCTCATCAAGGCAATTCTT CCCACCAACTCCGTTATGTCCAAGCCTCTTGCACACGCTTCCATTGTCGCCCGTCGCTCCAGTGAGCGCGGGTAC GCCGAACACGGCGGCTGGCTCAAAAGCTTTCACACCTTCAGTTTTGCCAACTACTATGATCATCGCTTCAACAAC TTTGGCAGTCTGCGCGTTCTCAACGAAGACCGTGTAGCCGCCCGTAATGGATTCCCGACCCACCCTCACCGTGAT GCCGAAATCTTCAGCTACATTCTCAACGGAGAACTCACGCACCGTGATAGCATGATCAAAAAGGGTGCGGAAGGC GCACAGGGCAAGCAATTTTACCGTATGAAGCGTGGTGACGTTCAGTTCACCACTGGTGGAACAGGTAAGTTGACT AGCATTGGACTCCATCACCATCAAATCGAAGATGACCAAACTAACCAACCAATTCACTCCAGGAATCGCACACTC CGAACAAAACGAATCCAACAAGCCTGTCCACTTCCTCCAGATCTGGGCTCTTCCCTGGAAACATGGCCTCAAGCC CCAATACCACACCCGCACGTTCGACGAAGCCGCTAAACGCAAAGCATTCGTCCCTATCCTCTCCCCGCTGGCTGC TGGGCCCGAAGCAACCCCGGCTGATGAGGAAGCCGCCATTCCTAAGATCCCAGACACGATCCCAATTCACGCAGA CTTTGTGATGGGCGCGGGAATCATTGAACCCGGGCAGAAGTTCCAGTGGACTGTTGGTGCTGGCGAAGACGTGGT CAGCCGGAAGAAGAAGAGGAACGTCTATGTGCATTTGCCCATGACGAAGAACGGCCAGGCCAAGATCCGATTGGA TCATCGGGACGAAGCGGTTTTCAGTGAGGGCGATGGAGCGTTTATCACAGGGGTGAATGCGGGTGATGTGCTGAG TGTGGAGAGTGTTGGAGATGCTGAGGCCGAGGTTGTGGTTTTGGACAGTGACTAG |