© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g2620.t1 |
| Gene name | |
| Location | scaffold_013:367604..368508 |
| Strand | + |
| Gene length (bp) | 904 |
| Transcript length (bp) | 846 |
| Coding sequence length (bp) | 846 |
| Protein length (aa) | 282 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01036 | Bac_rhodopsin | Bacteriorhodopsin-like protein | 6.0E-14 | 30 | 232 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
| 2 | 59 | 78 | 19 |
| 3 | 105 | 127 | 22 |
| 4 | 134 | 151 | 17 |
| 5 | 156 | 178 | 22 |
| 6 | 190 | 208 | 18 |
| 7 | 223 | 245 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g2620.t1 MSLFMRANDALNVNPIAGVDEALSVHGSDWLWAITAIYIVSFLGLLTMSFSGKESERVFHYLFTFLLLVGAITYY AQASDLGWSAVEQVNNLDNGAIRQMFWAKYINWVVAFPSLALALGLVSGVSWTTMICNIALACYWVTSYLVSAYT PSTYKWGFFAFGTLSWVILAMSTINESREAAQRLGVDRDYIILSGWCNLLWLLYPVAWGLSDGGNVIGITEATIF FGILDILMVPLLTFMFLFFARNWDYQKLSIAFSDARPSREAQSSKQQQVAESSPSA* |
| Coding | >Ani_SJS72_1|g2620.t1 ATGAGTCTCTTCATGCGAGCAAACGATGCTCTCAACGTCAACCCGATTGCCGGCGTTGATGAAGCCCTATCTGTG CATGGATCCGACTGGCTTTGGGCTATCACAGCCATCTATATTGTATCATTCCTTGGCCTCCTGACAATGTCCTTC TCCGGAAAAGAAAGTGAACGAGTATTCCACTACCTCTTCACCTTTCTCCTACTAGTCGGCGCAATAACCTACTAC GCCCAAGCCTCTGATCTCGGCTGGAGCGCTGTGGAACAAGTCAACAATCTCGACAACGGAGCAATACGCCAGATG TTCTGGGCGAAATACATCAACTGGGTTGTTGCATTCCCTTCGCTCGCTCTCGCACTCGGCCTCGTCTCAGGGGTT TCATGGACGACCATGATCTGCAATATCGCACTTGCCTGCTATTGGGTCACCAGCTACCTCGTGTCCGCATACACG CCCTCAACCTACAAATGGGGGTTTTTCGCTTTTGGAACCCTATCCTGGGTGATTCTCGCCATGAGCACTATAAAC GAGAGTCGGGAAGCCGCGCAACGGCTTGGGGTGGATCGTGATTACATTATTCTCTCTGGGTGGTGCAACCTGCTT TGGTTGTTGTACCCTGTGGCCTGGGGTTTGAGTGATGGGGGGAATGTTATTGGGATCACAGAAGCCACTATTTTC TTTGGGATTCTTGATATCCTCATGGTGCCGCTTTTGACATTTATGTTTCTTTTCTTTGCACGGAATTGGGATTAT CAGAAGTTGAGTATTGCCTTCAGTGATGCGAGGCCGAGCCGGGAGGCACAGAGTTCTAAGCAGCAGCAGGTGGCA GAGAGTAGTCCTTCTGCTTAG |
| Transcript | >Ani_SJS72_1|g2620.t1 ATGAGTCTCTTCATGCGAGCAAACGATGCTCTCAACGTCAACCCGATTGCCGGCGTTGATGAAGCCCTATCTGTG CATGGATCCGACTGGCTTTGGGCTATCACAGCCATCTATATTGTATCATTCCTTGGCCTCCTGACAATGTCCTTC TCCGGAAAAGAAAGTGAACGAGTATTCCACTACCTCTTCACCTTTCTCCTACTAGTCGGCGCAATAACCTACTAC GCCCAAGCCTCTGATCTCGGCTGGAGCGCTGTGGAACAAGTCAACAATCTCGACAACGGAGCAATACGCCAGATG TTCTGGGCGAAATACATCAACTGGGTTGTTGCATTCCCTTCGCTCGCTCTCGCACTCGGCCTCGTCTCAGGGGTT TCATGGACGACCATGATCTGCAATATCGCACTTGCCTGCTATTGGGTCACCAGCTACCTCGTGTCCGCATACACG CCCTCAACCTACAAATGGGGGTTTTTCGCTTTTGGAACCCTATCCTGGGTGATTCTCGCCATGAGCACTATAAAC GAGAGTCGGGAAGCCGCGCAACGGCTTGGGGTGGATCGTGATTACATTATTCTCTCTGGGTGGTGCAACCTGCTT TGGTTGTTGTACCCTGTGGCCTGGGGTTTGAGTGATGGGGGGAATGTTATTGGGATCACAGAAGCCACTATTTTC TTTGGGATTCTTGATATCCTCATGGTGCCGCTTTTGACATTTATGTTTCTTTTCTTTGCACGGAATTGGGATTAT CAGAAGTTGAGTATTGCCTTCAGTGATGCGAGGCCGAGCCGGGAGGCACAGAGTTCTAAGCAGCAGCAGGTGGCA GAGAGTAGTCCTTCTGCTTAG |
| Gene | >Ani_SJS72_1|g2620.t1 ATGAGTCTCTTCATGCGAGCAAACGATGCTCTCAACGTCAACCCGATTGCCGGCGTTGATGAAGCCCTATCTGTG CATGGATCCGACTGGCTTTGGGCTATCACAGCCATCTATATTGTATCATTCGTGAGTCATTTTCCCTCTGTACTC TAGTTTTGATTTCACCTATTAACATTAAACATAGCTTGGCCTCCTGACAATGTCCTTCTCCGGAAAAGAAAGTGA ACGAGTATTCCACTACCTCTTCACCTTTCTCCTACTAGTCGGCGCAATAACCTACTACGCCCAAGCCTCTGATCT CGGCTGGAGCGCTGTGGAACAAGTCAACAATCTCGACAACGGAGCAATACGCCAGATGTTCTGGGCGAAATACAT CAACTGGGTTGTTGCATTCCCTTCGCTCGCTCTCGCACTCGGCCTCGTCTCAGGGGTTTCATGGACGACCATGAT CTGCAATATCGCACTTGCCTGCTATTGGGTCACCAGCTACCTCGTGTCCGCATACACGCCCTCAACCTACAAATG GGGGTTTTTCGCTTTTGGAACCCTATCCTGGGTGATTCTCGCCATGAGCACTATAAACGAGAGTCGGGAAGCCGC GCAACGGCTTGGGGTGGATCGTGATTACATTATTCTCTCTGGGTGGTGCAACCTGCTTTGGTTGTTGTACCCTGT GGCCTGGGGTTTGAGTGATGGGGGGAATGTTATTGGGATCACAGAAGCCACTATTTTCTTTGGGATTCTTGATAT CCTCATGGTGCCGCTTTTGACATTTATGTTTCTTTTCTTTGCACGGAATTGGGATTATCAGAAGTTGAGTATTGC CTTCAGTGATGCGAGGCCGAGCCGGGAGGCACAGAGTTCTAAGCAGCAGCAGGTGGCAGAGAGTAGTCCTTCTGC TTAG |