© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g2523.t1 |
| Gene name | |
| Location | scaffold_013:49815..51480 |
| Strand | + |
| Gene length (bp) | 1665 |
| Transcript length (bp) | 1665 |
| Coding sequence length (bp) | 1665 |
| Protein length (aa) | 555 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 1.0E-109 | 55 | 509 |
| PF13520 | AA_permease_2 | Amino acid permease | 3.2E-31 | 58 | 495 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 85 | 107 | 22 |
| 3 | 128 | 150 | 22 |
| 4 | 165 | 187 | 22 |
| 5 | 194 | 216 | 22 |
| 6 | 247 | 269 | 22 |
| 7 | 289 | 311 | 22 |
| 8 | 326 | 348 | 22 |
| 9 | 385 | 407 | 22 |
| 10 | 417 | 439 | 22 |
| 11 | 458 | 480 | 22 |
| 12 | 490 | 512 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g2523.t1 MALSEKPEMASTSHPDPESGMAAGDLKSGALHEMIARDLLDERYKVTQRGLKNRHVQLMALGGTIGTGLFVGSGQ ALHIGGPLSLLLGYIFISVLVFALVTGIAEIGAYMPVHGGTMSYHGFRYVSRSMGFAMGYLYWYSLGILVPYEVV AASMVIDYWHPNVNLAVWITIMLVVIVLLNCLPVGVYGETEFWFSGIKIITLIGLLLLSFILFWGGGPNRQRLGF HYWKDPGVMNTYLVSGDAGRFVGLLQCIVKSAIAFIFAPELVVISGGEMESPRRNVPKAARRYIYRLVIFYVLGA LAIGVICSSNAKQLTAGSGTDASSSPFVVAISNAGIPVLDSIVNAAILTSAWSAGNSFLYMSSRSLYSLAVSGNA PSIFKACNRWGVPYYAVAISSLFSLLAYMAVGSGSYTVFNWLINFTNTSGFISWFCCSIVYFRFNKAVKVQGVEK PYASRMQPWGMYIGLVGSVFLALINGFTCFFPSEWSASNFFTAYIGIPAFVVLYVVHRIVFWSDPWAWRSEEVDL HTGLREIMEAEKPERVRDTWWKKLAVLVE* |
| Coding | >Ani_SJS72_1|g2523.t1 ATGGCTTTGTCGGAGAAACCAGAAATGGCGTCTACATCCCATCCGGACCCCGAGTCCGGCATGGCAGCCGGCGAT CTGAAGTCGGGTGCCTTGCATGAGATGATCGCGCGCGACCTGCTCGATGAACGATACAAGGTTACTCAGCGTGGC CTCAAAAACCGCCATGTCCAGCTCATGGCCCTGGGAGGCACAATCGGCACCGGTCTCTTCGTCGGGTCGGGTCAG GCTCTACATATCGGTGGTCCCCTGTCCCTTTTGCTCGGTTATATCTTCATTTCTGTCCTCGTCTTCGCCCTCGTC ACTGGCATCGCGGAAATCGGCGCCTACATGCCCGTTCACGGTGGAACAATGAGCTATCACGGCTTTCGCTATGTC TCGCGCAGTATGGGGTTCGCAATGGGATACTTGTACTGGTACTCGCTGGGTATTCTGGTCCCCTATGAGGTTGTC GCAGCCTCCATGGTCATCGATTACTGGCATCCGAACGTCAATCTGGCCGTCTGGATCACCATCATGCTGGTCGTT ATCGTGCTTCTCAACTGTCTCCCGGTGGGCGTATATGGCGAAACTGAATTCTGGTTCTCCGGAATCAAGATCATT ACTCTGATCGGTTTGCTGCTCTTGTCCTTCATACTCTTCTGGGGCGGTGGTCCCAACCGGCAACGCCTCGGGTTT CATTACTGGAAAGATCCAGGAGTCATGAACACCTACCTTGTCAGCGGTGATGCCGGTCGCTTCGTCGGACTTCTG CAGTGCATCGTCAAATCAGCTATCGCCTTCATCTTCGCGCCCGAATTGGTCGTCATCAGTGGCGGCGAAATGGAA TCCCCGCGTCGCAACGTCCCCAAGGCCGCACGTCGCTATATCTACCGACTGGTCATCTTCTACGTCCTAGGCGCT CTGGCCATCGGAGTGATCTGCTCCTCCAACGCCAAACAACTAACCGCCGGCTCGGGCACCGACGCCTCCTCCTCC CCCTTCGTCGTCGCAATCTCCAACGCGGGTATCCCCGTCCTCGACAGCATCGTCAACGCCGCGATCCTCACCTCC GCTTGGTCCGCCGGCAACTCCTTCCTGTACATGTCCTCCCGCTCACTCTATTCCCTCGCCGTCTCCGGCAACGCT CCGAGCATCTTCAAAGCCTGCAACCGATGGGGCGTACCGTACTACGCCGTGGCCATCTCCTCCCTTTTCTCCCTC CTCGCCTACATGGCCGTCGGCAGCGGCAGCTACACCGTCTTCAACTGGCTCATCAATTTCACCAACACTTCGGGC TTCATCTCCTGGTTCTGCTGCAGCATCGTCTACTTCCGCTTCAACAAGGCGGTGAAGGTACAGGGCGTCGAGAAA CCGTACGCATCGCGCATGCAGCCATGGGGCATGTACATCGGTCTGGTAGGGTCCGTTTTCCTTGCCCTCATCAAT GGATTCACGTGCTTCTTCCCGTCCGAGTGGTCCGCGAGTAACTTCTTCACGGCGTATATTGGTATCCCGGCGTTT GTGGTGCTATATGTTGTTCATCGCATCGTGTTCTGGAGTGATCCGTGGGCGTGGAGGAGTGAGGAGGTCGATTTG CATACTGGGTTGAGGGAGATTATGGAGGCGGAGAAGCCCGAGAGGGTCAGGGATACGTGGTGGAAGAAGTTGGCG GTTTTGGTGGAGTAG |
| Transcript | >Ani_SJS72_1|g2523.t1 ATGGCTTTGTCGGAGAAACCAGAAATGGCGTCTACATCCCATCCGGACCCCGAGTCCGGCATGGCAGCCGGCGAT CTGAAGTCGGGTGCCTTGCATGAGATGATCGCGCGCGACCTGCTCGATGAACGATACAAGGTTACTCAGCGTGGC CTCAAAAACCGCCATGTCCAGCTCATGGCCCTGGGAGGCACAATCGGCACCGGTCTCTTCGTCGGGTCGGGTCAG GCTCTACATATCGGTGGTCCCCTGTCCCTTTTGCTCGGTTATATCTTCATTTCTGTCCTCGTCTTCGCCCTCGTC ACTGGCATCGCGGAAATCGGCGCCTACATGCCCGTTCACGGTGGAACAATGAGCTATCACGGCTTTCGCTATGTC TCGCGCAGTATGGGGTTCGCAATGGGATACTTGTACTGGTACTCGCTGGGTATTCTGGTCCCCTATGAGGTTGTC GCAGCCTCCATGGTCATCGATTACTGGCATCCGAACGTCAATCTGGCCGTCTGGATCACCATCATGCTGGTCGTT ATCGTGCTTCTCAACTGTCTCCCGGTGGGCGTATATGGCGAAACTGAATTCTGGTTCTCCGGAATCAAGATCATT ACTCTGATCGGTTTGCTGCTCTTGTCCTTCATACTCTTCTGGGGCGGTGGTCCCAACCGGCAACGCCTCGGGTTT CATTACTGGAAAGATCCAGGAGTCATGAACACCTACCTTGTCAGCGGTGATGCCGGTCGCTTCGTCGGACTTCTG CAGTGCATCGTCAAATCAGCTATCGCCTTCATCTTCGCGCCCGAATTGGTCGTCATCAGTGGCGGCGAAATGGAA TCCCCGCGTCGCAACGTCCCCAAGGCCGCACGTCGCTATATCTACCGACTGGTCATCTTCTACGTCCTAGGCGCT CTGGCCATCGGAGTGATCTGCTCCTCCAACGCCAAACAACTAACCGCCGGCTCGGGCACCGACGCCTCCTCCTCC CCCTTCGTCGTCGCAATCTCCAACGCGGGTATCCCCGTCCTCGACAGCATCGTCAACGCCGCGATCCTCACCTCC GCTTGGTCCGCCGGCAACTCCTTCCTGTACATGTCCTCCCGCTCACTCTATTCCCTCGCCGTCTCCGGCAACGCT CCGAGCATCTTCAAAGCCTGCAACCGATGGGGCGTACCGTACTACGCCGTGGCCATCTCCTCCCTTTTCTCCCTC CTCGCCTACATGGCCGTCGGCAGCGGCAGCTACACCGTCTTCAACTGGCTCATCAATTTCACCAACACTTCGGGC TTCATCTCCTGGTTCTGCTGCAGCATCGTCTACTTCCGCTTCAACAAGGCGGTGAAGGTACAGGGCGTCGAGAAA CCGTACGCATCGCGCATGCAGCCATGGGGCATGTACATCGGTCTGGTAGGGTCCGTTTTCCTTGCCCTCATCAAT GGATTCACGTGCTTCTTCCCGTCCGAGTGGTCCGCGAGTAACTTCTTCACGGCGTATATTGGTATCCCGGCGTTT GTGGTGCTATATGTTGTTCATCGCATCGTGTTCTGGAGTGATCCGTGGGCGTGGAGGAGTGAGGAGGTCGATTTG CATACTGGGTTGAGGGAGATTATGGAGGCGGAGAAGCCCGAGAGGGTCAGGGATACGTGGTGGAAGAAGTTGGCG GTTTTGGTGGAGTAG |
| Gene | >Ani_SJS72_1|g2523.t1 ATGGCTTTGTCGGAGAAACCAGAAATGGCGTCTACATCCCATCCGGACCCCGAGTCCGGCATGGCAGCCGGCGAT CTGAAGTCGGGTGCCTTGCATGAGATGATCGCGCGCGACCTGCTCGATGAACGATACAAGGTTACTCAGCGTGGC CTCAAAAACCGCCATGTCCAGCTCATGGCCCTGGGAGGCACAATCGGCACCGGTCTCTTCGTCGGGTCGGGTCAG GCTCTACATATCGGTGGTCCCCTGTCCCTTTTGCTCGGTTATATCTTCATTTCTGTCCTCGTCTTCGCCCTCGTC ACTGGCATCGCGGAAATCGGCGCCTACATGCCCGTTCACGGTGGAACAATGAGCTATCACGGCTTTCGCTATGTC TCGCGCAGTATGGGGTTCGCAATGGGATACTTGTACTGGTACTCGCTGGGTATTCTGGTCCCCTATGAGGTTGTC GCAGCCTCCATGGTCATCGATTACTGGCATCCGAACGTCAATCTGGCCGTCTGGATCACCATCATGCTGGTCGTT ATCGTGCTTCTCAACTGTCTCCCGGTGGGCGTATATGGCGAAACTGAATTCTGGTTCTCCGGAATCAAGATCATT ACTCTGATCGGTTTGCTGCTCTTGTCCTTCATACTCTTCTGGGGCGGTGGTCCCAACCGGCAACGCCTCGGGTTT CATTACTGGAAAGATCCAGGAGTCATGAACACCTACCTTGTCAGCGGTGATGCCGGTCGCTTCGTCGGACTTCTG CAGTGCATCGTCAAATCAGCTATCGCCTTCATCTTCGCGCCCGAATTGGTCGTCATCAGTGGCGGCGAAATGGAA TCCCCGCGTCGCAACGTCCCCAAGGCCGCACGTCGCTATATCTACCGACTGGTCATCTTCTACGTCCTAGGCGCT CTGGCCATCGGAGTGATCTGCTCCTCCAACGCCAAACAACTAACCGCCGGCTCGGGCACCGACGCCTCCTCCTCC CCCTTCGTCGTCGCAATCTCCAACGCGGGTATCCCCGTCCTCGACAGCATCGTCAACGCCGCGATCCTCACCTCC GCTTGGTCCGCCGGCAACTCCTTCCTGTACATGTCCTCCCGCTCACTCTATTCCCTCGCCGTCTCCGGCAACGCT CCGAGCATCTTCAAAGCCTGCAACCGATGGGGCGTACCGTACTACGCCGTGGCCATCTCCTCCCTTTTCTCCCTC CTCGCCTACATGGCCGTCGGCAGCGGCAGCTACACCGTCTTCAACTGGCTCATCAATTTCACCAACACTTCGGGC TTCATCTCCTGGTTCTGCTGCAGCATCGTCTACTTCCGCTTCAACAAGGCGGTGAAGGTACAGGGCGTCGAGAAA CCGTACGCATCGCGCATGCAGCCATGGGGCATGTACATCGGTCTGGTAGGGTCCGTTTTCCTTGCCCTCATCAAT GGATTCACGTGCTTCTTCCCGTCCGAGTGGTCCGCGAGTAACTTCTTCACGGCGTATATTGGTATCCCGGCGTTT GTGGTGCTATATGTTGTTCATCGCATCGTGTTCTGGAGTGATCCGTGGGCGTGGAGGAGTGAGGAGGTCGATTTG CATACTGGGTTGAGGGAGATTATGGAGGCGGAGAAGCCCGAGAGGGTCAGGGATACGTGGTGGAAGAAGTTGGCG GTTTTGGTGGAGTAG |