© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g1892.t1 |
| Gene name | |
| Location | scaffold_009:79459..80481 |
| Strand | + |
| Gene length (bp) | 1022 |
| Transcript length (bp) | 897 |
| Coding sequence length (bp) | 897 |
| Protein length (aa) | 299 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 2.8E-08 | 19 | 75 |
| PF04193 | PQ-loop | PQ loop repeat | 7.3E-12 | 166 | 218 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 34 | 19 |
| 2 | 47 | 69 | 22 |
| 3 | 93 | 115 | 22 |
| 4 | 135 | 157 | 22 |
| 5 | 161 | 183 | 22 |
| 6 | 195 | 217 | 22 |
| 7 | 227 | 249 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g1892.t1 MDLSNPRCEHLASPDIKNFILSILIVFGILLSYTPQHVRILTMKTSFGISPYFVLLGTTSGSSALANVISQQQSL HDMACCKQVNGMGCFAGILGILQVGTQCLCFFIILFLFVLFFPRNTAHLPKSSPTYRTAVTVAVICILHAAFMLI TTLAVGYTRPSSLQAWSNFCGILSALLASIQYFPQIYTTLRLRCVGSLSIPMMCIQTPGSLVWAGSLAARLGPKG WSTWGVLIVTACLQGTLLCLGVFFEFLGPNRGHSHEGHDKDTEVVRGGAGEEEVVAEDDQDLPSEETPLLRDQ* |
| Coding | >Ani_SJS72_1|g1892.t1 ATGGACCTCTCCAATCCGCGATGCGAGCATCTGGCCTCGCCTGATATCAAAAACTTCATCCTCTCCATCCTCATC GTCTTCGGAATCCTCCTTTCCTACACCCCCCAACATGTCCGCATTCTCACCATGAAGACCTCCTTCGGCATCTCA CCGTACTTCGTCCTCCTAGGAACCACATCTGGTTCCTCGGCACTAGCAAACGTGATCTCCCAACAACAAAGCCTT CACGACATGGCCTGCTGCAAGCAAGTCAATGGGATGGGCTGTTTCGCAGGAATCCTTGGAATTCTTCAAGTCGGA ACCCAATGCCTTTGCTTCTTCATCATCCTATTCCTCTTCGTCCTCTTCTTCCCCCGGAACACCGCCCACCTCCCC AAATCCAGCCCAACCTACCGCACCGCCGTAACCGTCGCCGTCATCTGCATCCTTCACGCCGCCTTCATGCTTATC ACCACTCTCGCCGTCGGCTACACTCGCCCCTCTTCCCTCCAGGCATGGTCCAACTTCTGCGGCATCCTCTCCGCC CTCCTCGCCTCAATCCAATACTTCCCCCAGATCTACACGACTCTGCGACTCCGCTGCGTCGGATCCCTCAGCATC CCCATGATGTGCATCCAAACGCCCGGCAGTCTCGTCTGGGCGGGCAGTCTCGCAGCGCGATTAGGTCCAAAGGGG TGGAGTACATGGGGCGTATTGATTGTGACGGCTTGTCTGCAGGGAACGCTGCTCTGCTTGGGTGTGTTCTTTGAG TTCCTGGGACCAAACCGGGGACATAGTCATGAAGGGCATGATAAGGATACTGAGGTTGTGAGGGGAGGGGCCGGG GAAGAGGAGGTGGTGGCTGAGGATGATCAGGACTTGCCGTCGGAGGAGACGCCTTTGTTGAGGGATCAGTGA |
| Transcript | >Ani_SJS72_1|g1892.t1 ATGGACCTCTCCAATCCGCGATGCGAGCATCTGGCCTCGCCTGATATCAAAAACTTCATCCTCTCCATCCTCATC GTCTTCGGAATCCTCCTTTCCTACACCCCCCAACATGTCCGCATTCTCACCATGAAGACCTCCTTCGGCATCTCA CCGTACTTCGTCCTCCTAGGAACCACATCTGGTTCCTCGGCACTAGCAAACGTGATCTCCCAACAACAAAGCCTT CACGACATGGCCTGCTGCAAGCAAGTCAATGGGATGGGCTGTTTCGCAGGAATCCTTGGAATTCTTCAAGTCGGA ACCCAATGCCTTTGCTTCTTCATCATCCTATTCCTCTTCGTCCTCTTCTTCCCCCGGAACACCGCCCACCTCCCC AAATCCAGCCCAACCTACCGCACCGCCGTAACCGTCGCCGTCATCTGCATCCTTCACGCCGCCTTCATGCTTATC ACCACTCTCGCCGTCGGCTACACTCGCCCCTCTTCCCTCCAGGCATGGTCCAACTTCTGCGGCATCCTCTCCGCC CTCCTCGCCTCAATCCAATACTTCCCCCAGATCTACACGACTCTGCGACTCCGCTGCGTCGGATCCCTCAGCATC CCCATGATGTGCATCCAAACGCCCGGCAGTCTCGTCTGGGCGGGCAGTCTCGCAGCGCGATTAGGTCCAAAGGGG TGGAGTACATGGGGCGTATTGATTGTGACGGCTTGTCTGCAGGGAACGCTGCTCTGCTTGGGTGTGTTCTTTGAG TTCCTGGGACCAAACCGGGGACATAGTCATGAAGGGCATGATAAGGATACTGAGGTTGTGAGGGGAGGGGCCGGG GAAGAGGAGGTGGTGGCTGAGGATGATCAGGACTTGCCGTCGGAGGAGACGCCTTTGTTGAGGGATCAGTGA |
| Gene | >Ani_SJS72_1|g1892.t1 ATGGACCTCTCCAATCCGCGATGCGAGCATCTGGCCTCGCCTGATATCAAAAACTTCATCCTCTCCATGTACGTC TTTTACTCTAACCATTATGTATCCTACATTATACCGAAGCTAACTGTAATCAGCCTCATCGTCTTCGGAATCCTC CTTTCCTACACCCCCCAACATGTCCGCATTCTCACCATGAAGACCTCCTTCGGCATCTCACCGTACTTCGTCCTC CTAGGAACCACATCTGGTTCCTCGGCACTAGCAAACGTGATCTCCCAACAACAAAGCCTTCACGACATGGCCTGC TGCAAGCAAGTCAATGGGATGGGCTGTTTCGCAGGAATCCTTGGAATTCTTCAAGTCGGAACCCAATGCCTTTGC TTCTTCATCATGTAAGAACCCCATCATCGTCGTCAAACCATCCCATCCTAAACTAGCCACCAACTAACCCATCCA GCCTATTCCTCTTCGTCCTCTTCTTCCCCCGGAACACCGCCCACCTCCCCAAATCCAGCCCAACCTACCGCACCG CCGTAACCGTCGCCGTCATCTGCATCCTTCACGCCGCCTTCATGCTTATCACCACTCTCGCCGTCGGCTACACTC GCCCCTCTTCCCTCCAGGCATGGTCCAACTTCTGCGGCATCCTCTCCGCCCTCCTCGCCTCAATCCAATACTTCC CCCAGATCTACACGACTCTGCGACTCCGCTGCGTCGGATCCCTCAGCATCCCCATGATGTGCATCCAAACGCCCG GCAGTCTCGTCTGGGCGGGCAGTCTCGCAGCGCGATTAGGTCCAAAGGGGTGGAGTACATGGGGCGTATTGATTG TGACGGCTTGTCTGCAGGGAACGCTGCTCTGCTTGGGTGTGTTCTTTGAGTTCCTGGGACCAAACCGGGGACATA GTCATGAAGGGCATGATAAGGATACTGAGGTTGTGAGGGGAGGGGCCGGGGAAGAGGAGGTGGTGGCTGAGGATG ATCAGGACTTGCCGTCGGAGGAGACGCCTTTGTTGAGGGATCAGTGA |