© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g1883.t1 |
| Gene name | |
| Location | scaffold_009:53955..54921 |
| Strand | + |
| Gene length (bp) | 966 |
| Transcript length (bp) | 966 |
| Coding sequence length (bp) | 966 |
| Protein length (aa) | 322 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03006 | HlyIII | Haemolysin-III related | 6.7E-64 | 75 | 298 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 58 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 116 | 138 | 22 |
| 2 | 153 | 175 | 22 |
| 3 | 182 | 204 | 22 |
| 4 | 214 | 236 | 22 |
| 5 | 243 | 265 | 22 |
| 6 | 285 | 302 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g1883.t1 MSTRQRRPTQVHEKDLGTSQPAVVAAAVLEQPSQVIRKLLHWDDLPHWQRDNQHIHTGYRPASFSLLVSLQSLTY LHNETVNIYTHLLPSLLAVPAAGLLYRALAPRYESATQADLVAFGCFFAGAAFCLGMSATYHTISNHSPLVARIG NTFDYVGIVGLIVGSFVPSVYFGFYCMPDLQRLYWTMICALGLGCILVSIFPHFRTPRWRPFRASMFVGMGLSAV FPVIHGLRLYGLEQMTRQIGLGWLLLQGFLYILGATIYAARVPERLRPGHFDLWGSSHQIFHVLVVCAAIAHLTG LLKAFDYRHSGIADSCLGAAQ* |
| Coding | >Ani_SJS72_1|g1883.t1 ATGTCCACTCGCCAGCGTCGCCCCACTCAAGTCCATGAGAAGGATCTGGGTACCAGCCAGCCTGCTGTGGTGGCA GCTGCGGTGTTGGAACAGCCTTCCCAAGTCATCAGAAAGCTTCTTCACTGGGATGATCTGCCCCATTGGCAGCGC GACAACCAGCACATTCACACGGGCTATCGGCCGGCATCGTTCTCTCTTCTGGTCTCCCTGCAGTCCTTGACCTAC CTTCACAATGAAACGGTCAACATCTACACGCATCTGCTGCCGTCTTTACTGGCCGTTCCAGCGGCTGGGCTTCTC TATCGGGCACTAGCTCCGCGATATGAGAGTGCCACCCAGGCGGATCTGGTTGCTTTTGGATGCTTCTTCGCGGGG GCAGCCTTCTGTTTGGGCATGTCTGCAACATATCATACCATTTCGAATCACTCCCCCCTCGTGGCCCGCATCGGA AACACGTTTGACTATGTTGGTATCGTAGGGCTTATCGTGGGCAGCTTCGTGCCTAGCGTGTACTTTGGATTCTAC TGTATGCCTGATCTGCAACGGTTGTATTGGACGATGATCTGCGCTCTCGGTCTTGGCTGCATCCTTGTTTCGATC TTCCCTCATTTCCGGACGCCTCGGTGGCGGCCATTCCGTGCGTCCATGTTTGTCGGCATGGGTCTGTCAGCGGTG TTCCCCGTGATCCACGGCTTACGCTTGTACGGTCTGGAGCAGATGACACGCCAAATCGGGCTCGGCTGGCTGCTT CTCCAAGGTTTTCTGTACATTTTGGGAGCAACCATCTATGCGGCCCGGGTGCCGGAGCGCTTGCGACCAGGCCAC TTCGATCTCTGGGGCAGTTCCCATCAGATCTTTCATGTGCTGGTGGTCTGCGCTGCCATTGCTCATCTGACCGGG TTGCTAAAGGCATTTGATTACAGACACAGCGGCATTGCAGACAGTTGTCTTGGGGCCGCGCAATGA |
| Transcript | >Ani_SJS72_1|g1883.t1 ATGTCCACTCGCCAGCGTCGCCCCACTCAAGTCCATGAGAAGGATCTGGGTACCAGCCAGCCTGCTGTGGTGGCA GCTGCGGTGTTGGAACAGCCTTCCCAAGTCATCAGAAAGCTTCTTCACTGGGATGATCTGCCCCATTGGCAGCGC GACAACCAGCACATTCACACGGGCTATCGGCCGGCATCGTTCTCTCTTCTGGTCTCCCTGCAGTCCTTGACCTAC CTTCACAATGAAACGGTCAACATCTACACGCATCTGCTGCCGTCTTTACTGGCCGTTCCAGCGGCTGGGCTTCTC TATCGGGCACTAGCTCCGCGATATGAGAGTGCCACCCAGGCGGATCTGGTTGCTTTTGGATGCTTCTTCGCGGGG GCAGCCTTCTGTTTGGGCATGTCTGCAACATATCATACCATTTCGAATCACTCCCCCCTCGTGGCCCGCATCGGA AACACGTTTGACTATGTTGGTATCGTAGGGCTTATCGTGGGCAGCTTCGTGCCTAGCGTGTACTTTGGATTCTAC TGTATGCCTGATCTGCAACGGTTGTATTGGACGATGATCTGCGCTCTCGGTCTTGGCTGCATCCTTGTTTCGATC TTCCCTCATTTCCGGACGCCTCGGTGGCGGCCATTCCGTGCGTCCATGTTTGTCGGCATGGGTCTGTCAGCGGTG TTCCCCGTGATCCACGGCTTACGCTTGTACGGTCTGGAGCAGATGACACGCCAAATCGGGCTCGGCTGGCTGCTT CTCCAAGGTTTTCTGTACATTTTGGGAGCAACCATCTATGCGGCCCGGGTGCCGGAGCGCTTGCGACCAGGCCAC TTCGATCTCTGGGGCAGTTCCCATCAGATCTTTCATGTGCTGGTGGTCTGCGCTGCCATTGCTCATCTGACCGGG TTGCTAAAGGCATTTGATTACAGACACAGCGGCATTGCAGACAGTTGTCTTGGGGCCGCGCAATGA |
| Gene | >Ani_SJS72_1|g1883.t1 ATGTCCACTCGCCAGCGTCGCCCCACTCAAGTCCATGAGAAGGATCTGGGTACCAGCCAGCCTGCTGTGGTGGCA GCTGCGGTGTTGGAACAGCCTTCCCAAGTCATCAGAAAGCTTCTTCACTGGGATGATCTGCCCCATTGGCAGCGC GACAACCAGCACATTCACACGGGCTATCGGCCGGCATCGTTCTCTCTTCTGGTCTCCCTGCAGTCCTTGACCTAC CTTCACAATGAAACGGTCAACATCTACACGCATCTGCTGCCGTCTTTACTGGCCGTTCCAGCGGCTGGGCTTCTC TATCGGGCACTAGCTCCGCGATATGAGAGTGCCACCCAGGCGGATCTGGTTGCTTTTGGATGCTTCTTCGCGGGG GCAGCCTTCTGTTTGGGCATGTCTGCAACATATCATACCATTTCGAATCACTCCCCCCTCGTGGCCCGCATCGGA AACACGTTTGACTATGTTGGTATCGTAGGGCTTATCGTGGGCAGCTTCGTGCCTAGCGTGTACTTTGGATTCTAC TGTATGCCTGATCTGCAACGGTTGTATTGGACGATGATCTGCGCTCTCGGTCTTGGCTGCATCCTTGTTTCGATC TTCCCTCATTTCCGGACGCCTCGGTGGCGGCCATTCCGTGCGTCCATGTTTGTCGGCATGGGTCTGTCAGCGGTG TTCCCCGTGATCCACGGCTTACGCTTGTACGGTCTGGAGCAGATGACACGCCAAATCGGGCTCGGCTGGCTGCTT CTCCAAGGTTTTCTGTACATTTTGGGAGCAACCATCTATGCGGCCCGGGTGCCGGAGCGCTTGCGACCAGGCCAC TTCGATCTCTGGGGCAGTTCCCATCAGATCTTTCATGTGCTGGTGGTCTGCGCTGCCATTGCTCATCTGACCGGG TTGCTAAAGGCATTTGATTACAGACACAGCGGCATTGCAGACAGTTGTCTTGGGGCCGCGCAATGA |