© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g1879.t1 |
| Gene name | |
| Location | scaffold_009:47030..48613 |
| Strand | - |
| Gene length (bp) | 1583 |
| Transcript length (bp) | 1431 |
| Coding sequence length (bp) | 1431 |
| Protein length (aa) | 477 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10255 | Paf67 | RNA polymerase I-associated factor PAF67 | 3.1E-161 | 76 | 474 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003743 | translation initiation factor activity | Yes |
| GO:0005737 | cytoplasm | Yes |
| GO:0005852 | eukaryotic translation initiation factor 3 complex | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0005575 | cellular_component | No |
| GO:0090079 | translation regulator activity, nucleic acid binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0008135 | translation factor activity, RNA binding | No |
| GO:0045182 | translation regulator activity | No |
| GO:0003674 | molecular_function | No |
| GO:0032991 | protein-containing complex | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 195 | 217 | 22 |
| 2 | 230 | 252 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g1879.t1 MSYEERANAHPNLGDESDVEEEALVNDYREQVNFDDGMSELDRTTSLGGGSQTQDLQAQLAAAATPLEYQATLET KFASYDNYCSLFHYILNSDGPVELEVPSYYWAWDVIDEFIYQFESFCRYRNRVARSGSNEEEAQLLRENPNTWGC YSVLNVLYSLIQRSQINEQLAAIKRGEDPLAFAGEYGSRPLYKMLGYFSIIGLLRVHCLLGDFSLALKTLDDIEM NKKAMFARVMAAHFTTYYYVGFSYMMMRRYADAIRMFSHILVYVSRTKNFQKGGNSYDAIAKKNDQMYALIAICV ALHPTRLDDTIHSALREKYGEQLNRLQHGGPEALPLFEELFRSACPKFISPTPPDFENPALNVDPVDHHTAIFMD EVKNTLYNPTIRSYLKLYTTMDLKKLAGFLEVEPEKLRSWLLINKQRSRQVRWVEGGLLEGEPVNANDLDYALEN DLIHVSETKAGRRLVDWYLRNLARVY* |
| Coding | >Ani_SJS72_1|g1879.t1 ATGTCCTACGAAGAGCGCGCCAACGCGCACCCCAACCTGGGCGACGAGTCCGATGTGGAGGAGGAAGCGCTTGTC AACGACTACCGCGAGCAGGTCAACTTCGATGATGGCATGAGCGAGTTGGACAGAACGACATCCCTTGGAGGTGGT TCCCAGACGCAGGACCTCCAGGCACAGCTCGCTGCTGCTGCCACCCCGCTCGAGTACCAGGCTACCCTCGAGACC AAGTTCGCAAGCTACGACAACTACTGCAGCCTTTTCCACTACATCCTGAACTCTGATGGTCCGGTTGAGCTCGAG GTTCCTTCTTACTACTGGGCCTGGGATGTCATCGACGAGTTCATCTACCAGTTCGAATCTTTCTGCCGCTACCGC AACCGTGTCGCTCGCAGCGGCTCCAACGAGGAGGAGGCCCAGCTTCTCCGTGAGAACCCGAACACGTGGGGTTGC TACTCCGTGCTGAACGTCCTCTACTCCCTCATCCAAAGGTCGCAGATCAACGAGCAGTTGGCTGCCATCAAGCGT GGTGAGGACCCCTTGGCGTTTGCCGGAGAGTATGGCTCCCGCCCTCTGTACAAGATGCTGGGATACTTCTCCATC ATTGGACTCCTGCGTGTCCACTGTCTGCTGGGTGACTTCAGCCTTGCCCTCAAGACTCTCGACGACATCGAGATG AACAAGAAGGCCATGTTCGCCCGTGTTATGGCGGCCCACTTCACCACCTACTACTATGTCGGTTTCTCCTACATG ATGATGCGTCGCTATGCCGATGCCATCCGCATGTTCAGCCACATCCTGGTCTACGTTTCCCGGACCAAGAACTTC CAGAAGGGTGGCAACAGCTACGATGCCATCGCCAAGAAGAACGACCAGATGTACGCTCTTATCGCCATCTGTGTC GCTCTCCACCCCACTCGCCTGGATGACACCATCCACTCCGCCCTGCGTGAGAAGTACGGCGAGCAGCTCAACCGC CTGCAGCATGGTGGCCCCGAGGCCCTTCCTCTGTTCGAGGAGCTCTTCCGTTCGGCCTGCCCCAAGTTCATCAGC CCCACTCCTCCCGACTTCGAGAACCCGGCCCTCAACGTCGACCCTGTTGACCACCACACCGCCATCTTCATGGAT GAGGTTAAGAACACCCTGTACAACCCTACCATCCGCTCCTACCTGAAGCTCTACACCACCATGGACCTGAAGAAG CTGGCTGGCTTCTTGGAGGTCGAGCCTGAGAAGCTCCGCTCTTGGCTCCTCATCAACAAGCAGCGCAGCCGTCAG GTGCGCTGGGTTGAGGGTGGTCTTCTGGAGGGCGAGCCGGTCAACGCCAACGACCTCGACTACGCTCTGGAGAAC GACCTTATCCACGTCAGCGAGACCAAGGCCGGACGTCGTCTGGTGGACTGGTACCTCAGGAACCTTGCTCGTGTC TACTAA |
| Transcript | >Ani_SJS72_1|g1879.t1 ATGTCCTACGAAGAGCGCGCCAACGCGCACCCCAACCTGGGCGACGAGTCCGATGTGGAGGAGGAAGCGCTTGTC AACGACTACCGCGAGCAGGTCAACTTCGATGATGGCATGAGCGAGTTGGACAGAACGACATCCCTTGGAGGTGGT TCCCAGACGCAGGACCTCCAGGCACAGCTCGCTGCTGCTGCCACCCCGCTCGAGTACCAGGCTACCCTCGAGACC AAGTTCGCAAGCTACGACAACTACTGCAGCCTTTTCCACTACATCCTGAACTCTGATGGTCCGGTTGAGCTCGAG GTTCCTTCTTACTACTGGGCCTGGGATGTCATCGACGAGTTCATCTACCAGTTCGAATCTTTCTGCCGCTACCGC AACCGTGTCGCTCGCAGCGGCTCCAACGAGGAGGAGGCCCAGCTTCTCCGTGAGAACCCGAACACGTGGGGTTGC TACTCCGTGCTGAACGTCCTCTACTCCCTCATCCAAAGGTCGCAGATCAACGAGCAGTTGGCTGCCATCAAGCGT GGTGAGGACCCCTTGGCGTTTGCCGGAGAGTATGGCTCCCGCCCTCTGTACAAGATGCTGGGATACTTCTCCATC ATTGGACTCCTGCGTGTCCACTGTCTGCTGGGTGACTTCAGCCTTGCCCTCAAGACTCTCGACGACATCGAGATG AACAAGAAGGCCATGTTCGCCCGTGTTATGGCGGCCCACTTCACCACCTACTACTATGTCGGTTTCTCCTACATG ATGATGCGTCGCTATGCCGATGCCATCCGCATGTTCAGCCACATCCTGGTCTACGTTTCCCGGACCAAGAACTTC CAGAAGGGTGGCAACAGCTACGATGCCATCGCCAAGAAGAACGACCAGATGTACGCTCTTATCGCCATCTGTGTC GCTCTCCACCCCACTCGCCTGGATGACACCATCCACTCCGCCCTGCGTGAGAAGTACGGCGAGCAGCTCAACCGC CTGCAGCATGGTGGCCCCGAGGCCCTTCCTCTGTTCGAGGAGCTCTTCCGTTCGGCCTGCCCCAAGTTCATCAGC CCCACTCCTCCCGACTTCGAGAACCCGGCCCTCAACGTCGACCCTGTTGACCACCACACCGCCATCTTCATGGAT GAGGTTAAGAACACCCTGTACAACCCTACCATCCGCTCCTACCTGAAGCTCTACACCACCATGGACCTGAAGAAG CTGGCTGGCTTCTTGGAGGTCGAGCCTGAGAAGCTCCGCTCTTGGCTCCTCATCAACAAGCAGCGCAGCCGTCAG GTGCGCTGGGTTGAGGGTGGTCTTCTGGAGGGCGAGCCGGTCAACGCCAACGACCTCGACTACGCTCTGGAGAAC GACCTTATCCACGTCAGCGAGACCAAGGCCGGACGTCGTCTGGTGGACTGGTACCTCAGGAACCTTGCTCGTGTC TACTAA |
| Gene | >Ani_SJS72_1|g1879.t1 ATGTCCTACGAAGAGCGCGCCAACGCGCACCCCAACCTGGGCGACGAGTCCGATGTGGAGGAGGAAGCGCTTGTC AACGACTACCGCGAGCAGGTCAACTTCGATGATGGCATGAGCGAGTTGGACAGAACGACATCCCTTGGAGGTGGT TCCCAGACGCAGGACCTCCAGGCACAGCTCGCTGCTGCTGCCACCCCGCTCGAGTACCAGGCTACCCTCGAGACC AAGTTCGCAAGCTACGACAACTACTGCAGCCTTTTCCACTACATCCTGAACTCTGATGGTCCGGTTGAGCTCGAG GTTCCTTCTGTATGTACTACTCCGTCTGTCAGGAGCGGCGGGCAGCGGCTACGGCTGCAGCTATATTTGATACAC GCTTCGCTGCCTTGATCTGCAATTGTGTGCGGTTGATTCGCCGCGGTTGATACACTGTGCTAACTAGCCCATTTT ATTGTCAATAGTACTACTGGGCCTGGGATGTCATCGACGAGTTCATCTACCAGTTCGAATCTTTCTGCCGCTACC GCAACCGTGTCGCTCGCAGCGGCTCCAACGAGGAGGAGGCCCAGCTTCTCCGTGAGAACCCGAACACGTGGGGTT GCTACTCCGTGCTGAACGTCCTCTACTCCCTCATCCAAAGGTCGCAGATCAACGAGCAGTTGGCTGCCATCAAGC GTGGTGAGGACCCCTTGGCGTTTGCCGGAGAGTATGGCTCCCGCCCTCTGTACAAGATGCTGGGATACTTCTCCA TCATTGGACTCCTGCGTGTCCACTGTCTGCTGGGTGACTTCAGCCTTGCCCTCAAGACTCTCGACGACATCGAGA TGAACAAGAAGGCCATGTTCGCCCGTGTTATGGCGGCCCACTTCACCACCTACTACTATGTCGGTTTCTCCTACA TGATGATGCGTCGCTATGCCGATGCCATCCGCATGTTCAGCCACATCCTGGTCTACGTTTCCCGGACCAAGAACT TCCAGAAGGGTGGCAACAGCTACGATGCCATCGCCAAGAAGAACGACCAGATGTACGCTCTTATCGCCATCTGTG TCGCTCTCCACCCCACTCGCCTGGATGACACCATCCACTCCGCCCTGCGTGAGAAGTACGGCGAGCAGCTCAACC GCCTGCAGCATGGTGGCCCCGAGGCCCTTCCTCTGTTCGAGGAGCTCTTCCGTTCGGCCTGCCCCAAGTTCATCA GCCCCACTCCTCCCGACTTCGAGAACCCGGCCCTCAACGTCGACCCTGTTGACCACCACACCGCCATCTTCATGG ATGAGGTTAAGAACACCCTGTACAACCCTACCATCCGCTCCTACCTGAAGCTCTACACCACCATGGACCTGAAGA AGCTGGCTGGCTTCTTGGAGGTCGAGCCTGAGAAGCTCCGCTCTTGGCTCCTCATCAACAAGCAGCGCAGCCGTC AGGTGCGCTGGGTTGAGGGTGGTCTTCTGGAGGGCGAGCCGGTCAACGCCAACGACCTCGACTACGCTCTGGAGA ACGACCTTATCCACGTCAGCGAGACCAAGGCCGGACGTCGTCTGGTGGACTGGTACCTCAGGAACCTTGCTCGTG TCTACTAA |