© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g1765.t1 |
| Gene name | |
| Location | scaffold_008:255131..257828 |
| Strand | + |
| Gene length (bp) | 2697 |
| Transcript length (bp) | 2640 |
| Coding sequence length (bp) | 2640 |
| Protein length (aa) | 880 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13639 | zf-RING_2 | Ring finger domain | 2.4E-12 | 732 | 776 |
| PF17123 | zf-RING_11 | RING-like zinc finger | 2.3E-09 | 732 | 761 |
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 1.9E-08 | 734 | 776 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 1.2E-08 | 732 | 775 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 2.5E-08 | 733 | 775 |
| PF02225 | PA | PA domain | 2.5E-07 | 217 | 291 |
| PF14634 | zf-RING_5 | zinc-RING finger domain | 3.8E-07 | 732 | 776 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 5.3E-05 | 733 | 773 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0046872 | metal ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 605 | 627 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g1765.t1 MRPPRLILVVFCLIFLPIILTFFSALTSSPRVSTPDSLAGRATGLHALFSFNIPSSLFPPSAIISLTDDNSTFFL ARPAAFGPLLPDKGLSGQLWIGSGFGERTTAGAEGELGCSDIPGWGEGDGPKAGGGADSTNGKSGSTPGNEPTVP QSHRQAIPQPDIDLQHDSGTRAPSPLTNDGTDDHLHHPLPESQVPDSRAMEKHGEFYSNRQAAHADIQSLQESAE INGKVVLLSRGGCGFLEKVKWVQRRGGIALIVGDDTRGGSLVTMYARGDTSNVTIPALFTSHTTAHLLSSLVPPQ GEDSGADDGSGTHTKISTHGSAGKQRMDATATTSATASPTSSHKAVVHDSAMPPKQKPGLFHALLSLFGLSNHGG PVWYPPEDSRRPPSSGNINWILLDRWDEQEPSQDDTERKTSRTKTDGVSEDLKKSGTSSSSTDGDGFVIGVQDWR DPDLVVPKGSALPSPTSTTDAAGNRVHTGVKGSHPTPATLKGGSITPGSGEYRTVEKSSVEKESKVEDSSHKSVY DDVKPGSSSQRNGWFARHFFWATDKPGPSPSSSAHGQITSVDQKLHDATAQNGQGVNAAEHDGLWVTLTPTSMST SPFFDTLLVLVVSPLLTLTVVYVLLLLRSRIRRRRWRAPKSLVDRLPVRTYHTIARSTSSSETSSPRSVSPGPVS PTSPLLGAKSRSGAQLPSRSQQESHVSNASASRISSSRKGKSGSTLWRRKYTGRQVECVVCLEEYVDGQSRVMSL PCGHEFHAECITPWLTTRRRTCPICKGDVVRSMSQNKAAEAYESAEPMNEEEHHPDADSQHSSSSAPVPISGVSE DETSDLERHAGSETGLLEGQASSAPPSWRNFAALSYSALSGDTIWHQAQTDGSR* |
| Coding | >Ani_SJS72_1|g1765.t1 ATGCGACCACCACGTTTGATTCTTGTCGTCTTCTGCCTCATCTTCCTCCCCATCATCCTCACGTTCTTTTCTGCT TTAACCTCCTCGCCTAGGGTGTCCACCCCCGATTCACTCGCTGGTCGAGCGACGGGACTACACGCTCTCTTCTCC TTCAACATCCCCTCATCCCTGTTCCCGCCGTCCGCCATCATCAGCCTTACCGATGACAACTCTACCTTTTTCCTG GCCCGACCTGCTGCGTTTGGCCCTCTGCTTCCGGACAAGGGACTCAGCGGCCAACTCTGGATTGGCAGTGGCTTT GGGGAACGAACAACCGCCGGAGCGGAAGGGGAGCTAGGATGCTCCGATATCCCGGGTTGGGGAGAGGGAGATGGT CCGAAGGCGGGCGGAGGTGCCGATAGTACAAATGGGAAGTCGGGGTCTACTCCTGGAAACGAGCCGACCGTGCCA CAGAGCCATCGTCAAGCGATTCCCCAGCCGGATATCGACCTGCAGCATGACTCTGGTACCAGAGCGCCATCCCCG TTGACAAATGACGGCACCGATGACCATCTCCACCACCCGCTGCCCGAGTCACAAGTACCGGACTCAAGGGCCATG GAAAAGCACGGGGAGTTCTATTCGAACCGACAAGCGGCCCATGCTGATATCCAGTCGTTGCAAGAAAGTGCTGAG ATCAACGGCAAGGTCGTCCTACTGAGTAGGGGCGGCTGTGGCTTCTTGGAGAAGGTCAAGTGGGTCCAGCGGCGT GGAGGAATTGCTTTGATTGTGGGGGATGACACCCGAGGAGGAAGCCTCGTCACGATGTATGCACGGGGTGACACA TCCAACGTGACGATCCCCGCCCTCTTCACCTCTCACACTACGGCACACCTGCTGTCATCCTTAGTCCCTCCGCAA GGGGAGGACTCGGGCGCAGACGATGGATCAGGAACACACACTAAAATATCCACTCACGGCAGTGCCGGGAAACAA CGCATGGACGCCACGGCTACTACCTCTGCCACTGCGTCGCCAACTTCAAGTCACAAAGCAGTAGTTCACGATAGT GCGATGCCTCCGAAGCAGAAGCCCGGGCTCTTCCACGCTCTTCTGTCATTGTTCGGTCTCAGCAACCATGGTGGA CCCGTCTGGTACCCACCAGAGGACAGTCGTCGCCCGCCAAGCAGCGGGAACATTAATTGGATTCTACTAGATCGC TGGGACGAACAGGAACCATCACAGGATGATACCGAGCGAAAGACCTCCCGAACGAAAACCGATGGCGTTTCCGAA GACCTCAAGAAATCCGGCACCTCGTCGAGCAGTACTGACGGTGATGGGTTCGTCATTGGAGTACAGGACTGGAGA GATCCAGACCTAGTAGTTCCGAAGGGCAGCGCCCTTCCGTCACCTACCAGCACCACCGACGCCGCCGGGAACAGG GTGCATACTGGTGTCAAGGGCTCGCACCCTACGCCTGCGACTTTAAAGGGTGGCAGCATCACTCCAGGAAGTGGC GAGTATCGCACCGTCGAGAAGTCCAGCGTTGAAAAAGAGTCGAAGGTGGAGGACTCAAGTCACAAGTCTGTGTAT GATGATGTGAAACCAGGATCCTCTTCCCAGCGCAATGGTTGGTTTGCCAGGCATTTCTTCTGGGCAACGGACAAG CCAGGTCCGAGCCCAAGCTCCAGCGCCCATGGGCAAATTACTTCCGTAGACCAGAAGCTGCATGATGCGACAGCT CAGAACGGCCAGGGCGTGAATGCCGCCGAACACGACGGCTTGTGGGTCACACTCACGCCCACGAGCATGTCGACC AGCCCTTTCTTTGATACCCTCCTCGTCTTGGTCGTCAGCCCATTACTCACGCTGACTGTTGTTTACGTCCTGCTG TTGCTGCGGTCTCGTATCCGGCGTAGACGGTGGCGCGCTCCAAAGTCCCTCGTTGATCGCCTCCCTGTGCGAACT TATCATACCATTGCGAGATCGACCTCTTCCTCGGAAACGAGCTCGCCACGATCCGTTAGCCCTGGTCCAGTGTCG CCAACCTCGCCACTGTTGGGTGCGAAAAGCCGCTCAGGAGCCCAGTTGCCGTCTCGATCCCAGCAAGAGTCACAT GTCTCGAATGCGAGTGCGTCCAGGATATCATCATCGAGGAAGGGCAAGTCGGGGTCCACTTTGTGGCGACGGAAG TACACTGGTCGGCAAGTGGAATGTGTTGTGTGCCTGGAGGAATATGTGGATGGGCAGAGCAGGGTGATGAGTTTG CCCTGCGGCCACGAGTTCCACGCGGAGTGCATCACGCCTTGGCTGACGACCCGCCGGCGAACTTGTCCTATCTGC AAAGGCGACGTGGTTCGGTCAATGTCGCAGAACAAAGCGGCGGAGGCTTACGAGTCGGCAGAGCCGATGAACGAG GAAGAGCACCACCCTGACGCAGATTCTCAGCATAGTTCATCCTCAGCGCCGGTGCCGATCAGCGGAGTGAGCGAA GACGAGACCTCGGACCTTGAGCGGCATGCTGGCTCGGAAACAGGTCTTCTCGAGGGACAGGCGTCCTCTGCACCA CCGAGTTGGAGGAACTTTGCAGCACTGAGCTATTCTGCTCTTAGTGGTGATACGATCTGGCATCAGGCTCAGACG GACGGCAGCCGGTGA |
| Transcript | >Ani_SJS72_1|g1765.t1 ATGCGACCACCACGTTTGATTCTTGTCGTCTTCTGCCTCATCTTCCTCCCCATCATCCTCACGTTCTTTTCTGCT TTAACCTCCTCGCCTAGGGTGTCCACCCCCGATTCACTCGCTGGTCGAGCGACGGGACTACACGCTCTCTTCTCC TTCAACATCCCCTCATCCCTGTTCCCGCCGTCCGCCATCATCAGCCTTACCGATGACAACTCTACCTTTTTCCTG GCCCGACCTGCTGCGTTTGGCCCTCTGCTTCCGGACAAGGGACTCAGCGGCCAACTCTGGATTGGCAGTGGCTTT GGGGAACGAACAACCGCCGGAGCGGAAGGGGAGCTAGGATGCTCCGATATCCCGGGTTGGGGAGAGGGAGATGGT CCGAAGGCGGGCGGAGGTGCCGATAGTACAAATGGGAAGTCGGGGTCTACTCCTGGAAACGAGCCGACCGTGCCA CAGAGCCATCGTCAAGCGATTCCCCAGCCGGATATCGACCTGCAGCATGACTCTGGTACCAGAGCGCCATCCCCG TTGACAAATGACGGCACCGATGACCATCTCCACCACCCGCTGCCCGAGTCACAAGTACCGGACTCAAGGGCCATG GAAAAGCACGGGGAGTTCTATTCGAACCGACAAGCGGCCCATGCTGATATCCAGTCGTTGCAAGAAAGTGCTGAG ATCAACGGCAAGGTCGTCCTACTGAGTAGGGGCGGCTGTGGCTTCTTGGAGAAGGTCAAGTGGGTCCAGCGGCGT GGAGGAATTGCTTTGATTGTGGGGGATGACACCCGAGGAGGAAGCCTCGTCACGATGTATGCACGGGGTGACACA TCCAACGTGACGATCCCCGCCCTCTTCACCTCTCACACTACGGCACACCTGCTGTCATCCTTAGTCCCTCCGCAA GGGGAGGACTCGGGCGCAGACGATGGATCAGGAACACACACTAAAATATCCACTCACGGCAGTGCCGGGAAACAA CGCATGGACGCCACGGCTACTACCTCTGCCACTGCGTCGCCAACTTCAAGTCACAAAGCAGTAGTTCACGATAGT GCGATGCCTCCGAAGCAGAAGCCCGGGCTCTTCCACGCTCTTCTGTCATTGTTCGGTCTCAGCAACCATGGTGGA CCCGTCTGGTACCCACCAGAGGACAGTCGTCGCCCGCCAAGCAGCGGGAACATTAATTGGATTCTACTAGATCGC TGGGACGAACAGGAACCATCACAGGATGATACCGAGCGAAAGACCTCCCGAACGAAAACCGATGGCGTTTCCGAA GACCTCAAGAAATCCGGCACCTCGTCGAGCAGTACTGACGGTGATGGGTTCGTCATTGGAGTACAGGACTGGAGA GATCCAGACCTAGTAGTTCCGAAGGGCAGCGCCCTTCCGTCACCTACCAGCACCACCGACGCCGCCGGGAACAGG GTGCATACTGGTGTCAAGGGCTCGCACCCTACGCCTGCGACTTTAAAGGGTGGCAGCATCACTCCAGGAAGTGGC GAGTATCGCACCGTCGAGAAGTCCAGCGTTGAAAAAGAGTCGAAGGTGGAGGACTCAAGTCACAAGTCTGTGTAT GATGATGTGAAACCAGGATCCTCTTCCCAGCGCAATGGTTGGTTTGCCAGGCATTTCTTCTGGGCAACGGACAAG CCAGGTCCGAGCCCAAGCTCCAGCGCCCATGGGCAAATTACTTCCGTAGACCAGAAGCTGCATGATGCGACAGCT CAGAACGGCCAGGGCGTGAATGCCGCCGAACACGACGGCTTGTGGGTCACACTCACGCCCACGAGCATGTCGACC AGCCCTTTCTTTGATACCCTCCTCGTCTTGGTCGTCAGCCCATTACTCACGCTGACTGTTGTTTACGTCCTGCTG TTGCTGCGGTCTCGTATCCGGCGTAGACGGTGGCGCGCTCCAAAGTCCCTCGTTGATCGCCTCCCTGTGCGAACT TATCATACCATTGCGAGATCGACCTCTTCCTCGGAAACGAGCTCGCCACGATCCGTTAGCCCTGGTCCAGTGTCG CCAACCTCGCCACTGTTGGGTGCGAAAAGCCGCTCAGGAGCCCAGTTGCCGTCTCGATCCCAGCAAGAGTCACAT GTCTCGAATGCGAGTGCGTCCAGGATATCATCATCGAGGAAGGGCAAGTCGGGGTCCACTTTGTGGCGACGGAAG TACACTGGTCGGCAAGTGGAATGTGTTGTGTGCCTGGAGGAATATGTGGATGGGCAGAGCAGGGTGATGAGTTTG CCCTGCGGCCACGAGTTCCACGCGGAGTGCATCACGCCTTGGCTGACGACCCGCCGGCGAACTTGTCCTATCTGC AAAGGCGACGTGGTTCGGTCAATGTCGCAGAACAAAGCGGCGGAGGCTTACGAGTCGGCAGAGCCGATGAACGAG GAAGAGCACCACCCTGACGCAGATTCTCAGCATAGTTCATCCTCAGCGCCGGTGCCGATCAGCGGAGTGAGCGAA GACGAGACCTCGGACCTTGAGCGGCATGCTGGCTCGGAAACAGGTCTTCTCGAGGGACAGGCGTCCTCTGCACCA CCGAGTTGGAGGAACTTTGCAGCACTGAGCTATTCTGCTCTTAGTGGTGATACGATCTGGCATCAGGCTCAGACG GACGGCAGCCGGTGA |
| Gene | >Ani_SJS72_1|g1765.t1 ATGCGACCACCACGTTTGATTCTTGTCGTCTTCTGCCTCATCTTCCTCCCCATCATCCTCACGTTCTTTTCTGCT TTAACCTCCTCGCCTAGGGTGTCCACCCCCGATTCACTCGCTGGTCGAGCGACGGGACTACACGCTCTCTTCTCC TTCAACATCCCCTCATCCCTGTTCCCGCCGTCCGCCATCATCAGCCTTACCGATGACAACTCTACCTTTTTCCTG GCCCGACCTGCTGCGTTTGGCCCTCTGCTTCCGGACAAGGGACTCAGCGGCCAACTCTGGATTGGCAGTGGCTTT GGGGAACGAACAACCGCCGGAGCGGAAGGGGAGCTAGGATGCTCCGATATCCCGGGTTGGGGAGAGGGAGATGGT CCGAAGGCGGGCGGAGGTGCCGATAGTACAAATGGGAAGTCGGGGTCTACTCCTGGAAACGAGCCGACCGTGCCA CAGAGCCATCGTCAAGCGATTCCCCAGCCGGATATCGACCTGCAGCATGACTCTGGTACCAGAGCGCCATCCCCG TTGACAAATGACGGCACCGATGACCATCTCCACCACCCGCTGCCCGAGTCACAAGTACCGGACTCAAGGGCCATG GAAAAGCACGGGGAGTTCTATTCGAACCGACAAGCGGCCCATGCTGATATCCAGTCGTTGCAAGAAAGTGCTGAG ATCAACGGCAAGGTCGTCCTACTGAGTAGGGGCGGCTGTGGCTTCTTGGAGAAGGTCAAGTGGGTCCAGCGGCGT GGAGGAATTGCTTTGATTGTGGGGGATGACACCCGAGGAGGAAGCCTCGTCACGATGTATGCACGGGGTGACACA TCCAACGTGACGATCCCCGCCCTCTTCACCTCTCACACTACGGCACACCTGCTGTCATCCTTAGTCCCTCCGCAA GGGGAGGACTCGGGCGCAGACGATGGATCAGGAACACACACTAAAATATCCACTCACGGCAGTGCCGGGAAACAA CGCATGGACGCCACGGCTACTACCTCTGCCACTGCGTCGCCAACTTCAAGTCACAAAGCAGTAGTTCACGATAGT GCGATGCCTCCGAAGCAGAAGCCCGGGCTCTTCCACGCTCTTCTGTCATTGTTCGGTCTCAGCAACCATGGTGGA CCCGTCTGGTACCCACCAGAGGACAGTCGTCGCCCGCCAAGCAGCGGGAACATTAATTGGATTCTACTAGATCGC TGGGACGAACAGGAACCATCACAGGATGATACCGAGCGAAAGACCTCCCGAACGAAAACCGATGGCGTTTCCGAA GACCTCAAGAAATCCGGCACCTCGTCGAGCAGTACTGACGGTGATGGGTTCGTCATTGGAGTACAGGACTGGAGA GATCCAGACCTAGTAGTTCCGAAGGGCAGCGCCCTTCCGTCACCTACCAGCACCACCGACGCCGCCGGGAACAGG GTGCATACTGGTGTCAAGGGCTCGCACCCTACGCCTGCGACTTTAAAGGGTGGCAGCATCACTCCAGGAAGTGGC GAGTATCGCACCGTCGAGAAGTCCAGCGTTGAAAAAGAGTCGAAGGTGGAGGACTCAAGTCACAAGTCTGTGTAT GATGATGTGAAACCAGGATCCTCTTCCCAGCGCAATGGTTGGTTTGCCAGGCATTTCTTCTGGGCAACGGACAAG CCAGGTCCGAGCCCAAGCTCCAGCGCCCATGGGCAAATTACTTCCGTAGACCAGAAGCTGCATGATGCGACAGCT CAGAACGGCCAGGGCGTGAATGCCGCCGAACACGACGGCTTGTGGGTCACACTCACGCCCACGAGCATGTCGACC AGCCCTTTCTTTGATACCCTCCTCGTCTTGGTCGTCAGCCCATTACTCACGCTGACTGTTGTTTACGTCCTGCTG TTGCTGCGGTCTCGTATCCGGCGTAGACGGTGGCGCGCTCCAAAGTCCCTCGTTGATCGCCTCCCTGTGCGAACT TATCATACCATTGCGAGATCGACCTCTTCCTCGGAAACGAGCTCGCCACGATCCGTTAGCCCTGGTCCAGTGTCG CCAACCTCGCCACTGTTGGGTGCGAAAAGCCGCTCAGGAGCCCAGTTGCCGTCTCGATCCCAGCAAGAGTCACAT GTCTCGAATGCGAGTGCGTCCAGGATATCATCATCGAGGAAGGGCAAGTCGGGGTCCACTTTGTGGCGACGGAAG TACACTGGTCGGCAAGTGGAATGTGTTGTGTGCCTGGAGGAATATGTGGATGGGCAGAGCAGGGTGATGAGTTTG CCCTGCGGCCACGAGTTCCACGCGGAGTGCATGTAAGTCACAATGCTGGAGTCTGTTGTCAAGCATGTCCATACT AACGATACTCGCAGCACGCCTTGGCTGACGACCCGCCGGCGAACTTGTCCTATCTGCAAAGGCGACGTGGTTCGG TCAATGTCGCAGAACAAAGCGGCGGAGGCTTACGAGTCGGCAGAGCCGATGAACGAGGAAGAGCACCACCCTGAC GCAGATTCTCAGCATAGTTCATCCTCAGCGCCGGTGCCGATCAGCGGAGTGAGCGAAGACGAGACCTCGGACCTT GAGCGGCATGCTGGCTCGGAAACAGGTCTTCTCGAGGGACAGGCGTCCTCTGCACCACCGAGTTGGAGGAACTTT GCAGCACTGAGCTATTCTGCTCTTAGTGGTGATACGATCTGGCATCAGGCTCAGACGGACGGCAGCCGGTGA |