© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g1461.t1 |
| Gene name | |
| Location | scaffold_006:562513..565397 |
| Strand | - |
| Gene length (bp) | 2884 |
| Transcript length (bp) | 2754 |
| Coding sequence length (bp) | 2754 |
| Protein length (aa) | 918 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00176 | SNF2-rel_dom | SNF2-related domain | 7.7E-66 | 302 | 630 |
| PF08797 | HIRAN | HIRAN domain | 7.1E-17 | 80 | 163 |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | 6.9E-13 | 745 | 858 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 2.7E-09 | 674 | 711 |
| PF13639 | zf-RING_2 | Ring finger domain | 1.1E-08 | 672 | 712 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 5.1E-08 | 674 | 711 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 5.0E-08 | 671 | 717 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 2.5E-06 | 674 | 709 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0140658 | ATP-dependent chromatin remodeler activity | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0140657 | ATP-dependent activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043168 | anion binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0008094 | ATP-dependent activity, acting on DNA | No |
| GO:0000166 | nucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043169 | cation binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0140097 | catalytic activity, acting on DNA | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0016787 | hydrolase activity | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0036094 | small molecule binding | No |
| Orthofinder run ID | 3 |
| Orthogroup | 8863 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g1461.t1 MGRTPGKRGFEQVDLTTDEATNNTRHHPTPRTTINGQRFGQDTTFVPLSQSGEDEDDAQATDLIQGSQDAGDDAS TYIHYGDLKAKIVGVRYYRGHATIGEHVRIARDPGNPYDSNAIRVDNVMGQQIGHIPRTVAAKLAKYLDDRSLVV DGVLTGVIGAFDCPISLKLFGTSHTEARQALKSRMEMDNLPLGGFKQNERNEKKLEKEREKARKEAAKLARSLAK GKGKQFQGENALGYSNLFTGEGLVEGENLEELIGQSSTFNPRDIGHVAEDFGMKESDLENMPMAESPAALATELL PYQRQGLAWMIAKENPSLPGDGGDVVQLWKKNGNKYTNIATNYSMTQAPPLASGGILADDMGLGKTIQILSLIMV NSQPKTPESSRTTLIVAPVGVMSNWRNQALVHTHSDKAPKVLIYHGQGKKEASNLDQYDVVVTSYGALAMEYSPN AKAPPKKGLFSIHWRRVVLDEGHTIRNPRSKGALAACNLRAGSRWTLTGTPIVNTLKDLYSQVRFLRLTGGLEDL AVFNSVLIRPLLSGDPDSRLLLQALMTTICLRRRKDMNFVNLRLPPLTSRILRIKFHTHEQEKYDMFQSEAKGML LDFKFKDKSNTNYSHLLEVILRLRQVCNHWALCKNRLDKLADLLENNKVVPLTPENIKALQEMLQIRIESQDTCP ICLDNLEQPVITACAHAFDRPCIEQVIERQHKCPMCRAEIQDTTTLVSPAVEMGESTDTVDADPDNPSSKIEALI KILTAKGQAQGTKTVIFSQWTSFLDLIEPHLFRHGIGFARIDGKMSSISRDNSTLRFSTDPSCTVLLASLSVCSV GLNLVAANQAILCDSWWAPAIEDQAVDRVYRLGQTRETTVWRLVMEDSIEDRVLAIQENKRKLMLEAFRETATRK KVDDRATRVADLEKLLK* |
| Coding | >Ani_SJS72_1|g1461.t1 ATGGGTCGCACCCCAGGGAAGCGCGGCTTCGAGCAGGTCGATCTCACCACCGACGAAGCCACCAACAACACACGA CATCATCCCACTCCCCGCACCACCATCAATGGCCAACGCTTCGGCCAAGACACGACCTTCGTGCCCCTTAGCCAA TCAGGCGAGGACGAAGACGACGCCCAAGCAACAGATCTCATCCAAGGAAGCCAAGATGCTGGCGATGATGCTTCC ACATACATTCATTATGGGGACCTGAAAGCCAAGATCGTCGGCGTGCGGTACTATCGCGGACATGCTACGATCGGG GAGCATGTTCGTATTGCGCGCGACCCGGGGAACCCGTATGATTCGAATGCTATCCGCGTGGATAATGTCATGGGG CAGCAGATTGGCCATATTCCGCGGACGGTGGCGGCTAAGTTGGCGAAGTATTTGGATGATAGGTCTCTTGTTGTT GATGGTGTTTTGACCGGTGTGATTGGCGCTTTTGATTGCCCAATTTCCCTCAAGCTGTTTGGGACTAGTCACACG GAGGCGAGACAGGCGCTAAAGAGTCGGATGGAAATGGATAATTTGCCTCTTGGAGGGTTCAAGCAGAATGAGCGC AATGAGAAGAAACTAGAGAAGGAACGGGAGAAGGCAAGGAAGGAGGCGGCGAAGTTGGCGAGATCGCTTGCCAAG GGCAAAGGGAAGCAGTTCCAGGGAGAGAATGCATTGGGCTATTCGAATCTCTTCACTGGGGAAGGGCTGGTTGAA GGTGAGAATCTGGAGGAACTCATTGGCCAGAGCAGCACTTTTAATCCACGCGATATCGGCCATGTCGCGGAGGAC TTTGGCATGAAGGAATCCGATTTGGAAAATATGCCGATGGCGGAGTCTCCGGCTGCTTTGGCGACAGAACTTCTT CCGTATCAGCGCCAGGGGCTTGCTTGGATGATTGCTAAGGAGAATCCGAGTCTTCCTGGCGATGGGGGTGATGTC GTGCAGCTCTGGAAGAAGAATGGTAACAAGTACACCAATATTGCTACCAATTACTCTATGACGCAGGCTCCGCCT CTTGCGAGCGGTGGTATACTGGCTGATGATATGGGATTGGGAAAGACTATTCAGATCCTTTCCCTAATAATGGTC AATTCTCAGCCCAAGACTCCGGAGTCCTCCAGAACCACACTGATCGTGGCCCCGGTTGGTGTGATGAGCAATTGG CGAAACCAGGCGCTTGTTCATACTCATAGCGACAAAGCTCCGAAGGTGCTTATATACCATGGGCAAGGGAAGAAG GAAGCAAGCAACCTTGACCAGTATGATGTCGTTGTTACGAGCTACGGTGCACTGGCCATGGAGTACAGCCCGAAT GCCAAGGCACCTCCTAAGAAGGGTCTCTTTTCCATCCATTGGCGTCGTGTCGTTCTTGATGAAGGGCATACCATC CGCAATCCACGGTCAAAGGGTGCCCTGGCAGCTTGCAACCTGAGGGCGGGCTCACGATGGACACTTACAGGAACG CCCATTGTCAACACACTCAAGGACCTCTACTCGCAGGTGCGCTTTTTGAGACTCACCGGTGGCCTCGAGGATTTG GCCGTCTTCAACAGTGTCCTGATCCGGCCTCTATTGTCCGGAGACCCTGATTCCCGCCTGCTACTCCAAGCCCTG ATGACTACTATCTGCCTACGTCGCAGAAAGGACATGAACTTTGTGAACTTGCGCTTGCCGCCCCTCACTTCACGC ATCCTGCGCATCAAGTTCCACACCCACGAGCAAGAGAAATACGACATGTTCCAATCCGAGGCCAAGGGCATGCTC CTGGACTTCAAATTCAAAGACAAATCTAACACCAACTACTCCCACCTTCTCGAAGTAATTCTCCGTCTCCGGCAA GTCTGCAACCACTGGGCCCTCTGCAAGAACCGACTAGACAAGCTCGCCGACCTCCTCGAGAACAACAAAGTCGTC CCCCTTACACCCGAAAACATCAAAGCCCTCCAAGAGATGCTCCAAATCCGCATCGAAAGCCAAGACACCTGCCCC ATTTGTCTCGACAATCTCGAACAGCCCGTAATCACCGCCTGCGCACACGCCTTCGACCGACCTTGCATCGAACAA GTCATCGAACGCCAACATAAATGTCCCATGTGCCGCGCCGAAATTCAAGACACTACCACCCTGGTCTCTCCCGCC GTCGAAATGGGCGAAAGCACCGACACTGTCGACGCCGACCCCGACAATCCCAGCAGCAAAATCGAAGCCTTGATC AAGATCCTCACAGCAAAGGGCCAAGCACAAGGGACCAAAACCGTCATCTTCAGCCAATGGACCTCCTTCCTCGAC CTCATCGAACCCCACCTTTTCCGCCACGGCATCGGCTTCGCCCGCATCGACGGCAAAATGTCCTCCATCAGTCGT GATAACTCCACCCTGCGATTCTCCACCGATCCATCATGCACTGTCCTCCTCGCTAGCTTGAGCGTCTGCAGCGTT GGCTTGAACCTCGTGGCAGCTAACCAGGCTATCCTGTGCGATAGCTGGTGGGCTCCCGCCATCGAAGACCAAGCT GTCGATCGTGTATACCGGCTGGGTCAGACACGCGAAACTACTGTGTGGAGACTTGTTATGGAGGATAGTATTGAG GATCGTGTGCTGGCTATTCAGGAGAATAAGCGGAAGTTGATGCTCGAGGCGTTCAGGGAGACAGCGACGAGGAAA AAGGTGGATGATAGAGCGACGAGGGTGGCAGATTTGGAGAAGTTGTTGAAGTAG |
| Transcript | >Ani_SJS72_1|g1461.t1 ATGGGTCGCACCCCAGGGAAGCGCGGCTTCGAGCAGGTCGATCTCACCACCGACGAAGCCACCAACAACACACGA CATCATCCCACTCCCCGCACCACCATCAATGGCCAACGCTTCGGCCAAGACACGACCTTCGTGCCCCTTAGCCAA TCAGGCGAGGACGAAGACGACGCCCAAGCAACAGATCTCATCCAAGGAAGCCAAGATGCTGGCGATGATGCTTCC ACATACATTCATTATGGGGACCTGAAAGCCAAGATCGTCGGCGTGCGGTACTATCGCGGACATGCTACGATCGGG GAGCATGTTCGTATTGCGCGCGACCCGGGGAACCCGTATGATTCGAATGCTATCCGCGTGGATAATGTCATGGGG CAGCAGATTGGCCATATTCCGCGGACGGTGGCGGCTAAGTTGGCGAAGTATTTGGATGATAGGTCTCTTGTTGTT GATGGTGTTTTGACCGGTGTGATTGGCGCTTTTGATTGCCCAATTTCCCTCAAGCTGTTTGGGACTAGTCACACG GAGGCGAGACAGGCGCTAAAGAGTCGGATGGAAATGGATAATTTGCCTCTTGGAGGGTTCAAGCAGAATGAGCGC AATGAGAAGAAACTAGAGAAGGAACGGGAGAAGGCAAGGAAGGAGGCGGCGAAGTTGGCGAGATCGCTTGCCAAG GGCAAAGGGAAGCAGTTCCAGGGAGAGAATGCATTGGGCTATTCGAATCTCTTCACTGGGGAAGGGCTGGTTGAA GGTGAGAATCTGGAGGAACTCATTGGCCAGAGCAGCACTTTTAATCCACGCGATATCGGCCATGTCGCGGAGGAC TTTGGCATGAAGGAATCCGATTTGGAAAATATGCCGATGGCGGAGTCTCCGGCTGCTTTGGCGACAGAACTTCTT CCGTATCAGCGCCAGGGGCTTGCTTGGATGATTGCTAAGGAGAATCCGAGTCTTCCTGGCGATGGGGGTGATGTC GTGCAGCTCTGGAAGAAGAATGGTAACAAGTACACCAATATTGCTACCAATTACTCTATGACGCAGGCTCCGCCT CTTGCGAGCGGTGGTATACTGGCTGATGATATGGGATTGGGAAAGACTATTCAGATCCTTTCCCTAATAATGGTC AATTCTCAGCCCAAGACTCCGGAGTCCTCCAGAACCACACTGATCGTGGCCCCGGTTGGTGTGATGAGCAATTGG CGAAACCAGGCGCTTGTTCATACTCATAGCGACAAAGCTCCGAAGGTGCTTATATACCATGGGCAAGGGAAGAAG GAAGCAAGCAACCTTGACCAGTATGATGTCGTTGTTACGAGCTACGGTGCACTGGCCATGGAGTACAGCCCGAAT GCCAAGGCACCTCCTAAGAAGGGTCTCTTTTCCATCCATTGGCGTCGTGTCGTTCTTGATGAAGGGCATACCATC CGCAATCCACGGTCAAAGGGTGCCCTGGCAGCTTGCAACCTGAGGGCGGGCTCACGATGGACACTTACAGGAACG CCCATTGTCAACACACTCAAGGACCTCTACTCGCAGGTGCGCTTTTTGAGACTCACCGGTGGCCTCGAGGATTTG GCCGTCTTCAACAGTGTCCTGATCCGGCCTCTATTGTCCGGAGACCCTGATTCCCGCCTGCTACTCCAAGCCCTG ATGACTACTATCTGCCTACGTCGCAGAAAGGACATGAACTTTGTGAACTTGCGCTTGCCGCCCCTCACTTCACGC ATCCTGCGCATCAAGTTCCACACCCACGAGCAAGAGAAATACGACATGTTCCAATCCGAGGCCAAGGGCATGCTC CTGGACTTCAAATTCAAAGACAAATCTAACACCAACTACTCCCACCTTCTCGAAGTAATTCTCCGTCTCCGGCAA GTCTGCAACCACTGGGCCCTCTGCAAGAACCGACTAGACAAGCTCGCCGACCTCCTCGAGAACAACAAAGTCGTC CCCCTTACACCCGAAAACATCAAAGCCCTCCAAGAGATGCTCCAAATCCGCATCGAAAGCCAAGACACCTGCCCC ATTTGTCTCGACAATCTCGAACAGCCCGTAATCACCGCCTGCGCACACGCCTTCGACCGACCTTGCATCGAACAA GTCATCGAACGCCAACATAAATGTCCCATGTGCCGCGCCGAAATTCAAGACACTACCACCCTGGTCTCTCCCGCC GTCGAAATGGGCGAAAGCACCGACACTGTCGACGCCGACCCCGACAATCCCAGCAGCAAAATCGAAGCCTTGATC AAGATCCTCACAGCAAAGGGCCAAGCACAAGGGACCAAAACCGTCATCTTCAGCCAATGGACCTCCTTCCTCGAC CTCATCGAACCCCACCTTTTCCGCCACGGCATCGGCTTCGCCCGCATCGACGGCAAAATGTCCTCCATCAGTCGT GATAACTCCACCCTGCGATTCTCCACCGATCCATCATGCACTGTCCTCCTCGCTAGCTTGAGCGTCTGCAGCGTT GGCTTGAACCTCGTGGCAGCTAACCAGGCTATCCTGTGCGATAGCTGGTGGGCTCCCGCCATCGAAGACCAAGCT GTCGATCGTGTATACCGGCTGGGTCAGACACGCGAAACTACTGTGTGGAGACTTGTTATGGAGGATAGTATTGAG GATCGTGTGCTGGCTATTCAGGAGAATAAGCGGAAGTTGATGCTCGAGGCGTTCAGGGAGACAGCGACGAGGAAA AAGGTGGATGATAGAGCGACGAGGGTGGCAGATTTGGAGAAGTTGTTGAAGTAG |
| Gene | >Ani_SJS72_1|g1461.t1 ATGGGTCGCACCCCAGGGAAGCGCGGCTTCGAGCAGGTCGATCTCACCACCGACGAAGCCACCAACAACACACGA CATCATCCCACTCCCCGCACCACCATCAATGGCCAACGCTTCGGCCAAGACACGACCTTCGTGCCCCTTAGCCAA TCAGGCGAGGACGAAGACGACGCCCAAGCAACAGATCTCATCCAAGGAAGCCAAGATGCTGGCGATGATGCTTCC ACATACATTCATTATGGGGACCTGAAAGCCAAGATCGTCGGCGTGCGGTACTATCGCGGACATGCTACGATCGGG GAGCATGTTCGTATTGCGCGCGACCCGGGGAACCCGTATGATTCGAATGCTATCCGCGTGGATAATGTCATGGGG CAGCAGATTGGCCATATTCCGCGGACGGTGGCGGCTAAGTTGGCGAAGTATTTGGTGAGTAATATTTTCTTAGAT TGTAATGTGTAGTTTGAATTGGTTTGGGGCTCTGTTTGACGTGGTTTTCTGGGGTTGGTGTAGGATGATAGGTCT CTTGTTGTTGATGGTGTTTTGACCGGTGTGATTGGCGCTTTTGATTGCCCAATTTCCCTCAAGCTGTTTGGGACT AGTCACACGGAGGCGAGACAGGCGCTAAAGAGTCGGATGGAAATGGATAATTTGCCTCTTGGAGGGTTCAAGCAG AATGAGCGCAATGAGAAGAAACTAGAGAAGGAACGGGAGAAGGCAAGGAAGGAGGCGGCGAAGTTGGCGAGATCG CTTGCCAAGGGCAAAGGGAAGCAGTTCCAGGGAGAGAATGCATTGGGCTATTCGAATCTCTTCACTGGGGAAGGG CTGGTTGAAGGTGAGAATCTGGAGGAACTCATTGGCCAGAGCAGCACTTTTAATCCACGCGATATCGGCCATGTC GCGGAGGACTTTGGCATGAAGGAATCCGATTTGGAAAATATGCCGATGGCGGAGTCTCCGGCTGCTTTGGCGACA GAACTTCTTCCGTATCAGCGCCAGGGGCTTGCTTGGATGATTGCTAAGGAGAATCCGAGTCTTCCTGGCGATGGG GGTGATGTCGTGCAGCTCTGGAAGAAGAATGGTAACAAGTACACCAATATTGCTACCAATTACTCTATGACGCAG GCTCCGCCTCTTGCGAGCGGTGGTATACTGGCTGATGATATGGGATTGGGAAAGACTATTCAGATCCTTTCCCTA ATAATGGTCAATTCTCAGCCCAAGACTCCGGAGTCCTCCAGAACCACACTGATCGTGGCCCCGGTTGGTGTGATG AGCAATTGGCGAAACCAGGCGCTTGTTCATACTCATAGCGACAAAGCTCCGAAGGTGCTTATATACCATGGGCAA GGGAAGAAGGAAGCAAGCAACCTTGACCAGTATGATGTCGTTGTTACGAGCTACGGTGCACTGGCCATGGAGTAC AGCCCGAATGCCAAGGCACCTCCTAAGAAGGGTCTCTTTTCCATCCATTGGCGTCGTGTCGTTCTTGATGAAGGG CATACCATCCGCAATCCACGGTCAAAGGGTGCCCTGGCAGCTTGCAACCTGAGGGCGGGCTCACGATGGACACTT ACAGGAACGCCCATTGTCAACACACTCAAGGACCTCTACTCGCAGGTGCGCTTTTTGAGACTCACCGGTGGCCTC GAGGATTTGGCCGTCTTCAACAGTGTCCTGATCCGGCCTCTATTGTCCGGAGACCCTGATTCCCGCCTGCTACTC CAAGCCCTGATGACTACTATCTGCCTACGTCGCAGAAAGGACATGAACTTTGTGAACTTGCGCTTGCCGCCCCTC ACTTCACGCATCCTGCGCATCAAGTTCCACACCCACGAGCAAGAGAAATACGACATGTTCCAGTACGTATCCCGA CCAACTTCCTTGATCCTAACTGACACCCCGCAGATCCGAGGCCAAGGGCATGCTCCTGGACTTCAAATTCAAAGA CAAATCTAACACCAACTACTCCCACCTTCTCGAAGTAATTCTCCGTCTCCGGCAAGTCTGCAACCACTGGGCCCT CTGCAAGAACCGACTAGACAAGCTCGCCGACCTCCTCGAGAACAACAAAGTCGTCCCCCTTACACCCGAAAACAT CAAAGCCCTCCAAGAGATGCTCCAAATCCGCATCGAAAGCCAAGACACCTGCCCCATTTGTCTCGACAATCTCGA ACAGCCCGTAATCACCGCCTGCGCACACGCCTTCGACCGACCTTGCATCGAACAAGTCATCGAACGCCAACATAA ATGTCCCATGTGCCGCGCCGAAATTCAAGACACTACCACCCTGGTCTCTCCCGCCGTCGAAATGGGCGAAAGCAC CGACACTGTCGACGCCGACCCCGACAATCCCAGCAGCAAAATCGAAGCCTTGATCAAGATCCTCACAGCAAAGGG CCAAGCACAAGGGACCAAAACCGTCATCTTCAGCCAATGGACCTCCTTCCTCGACCTCATCGAACCCCACCTTTT CCGCCACGGCATCGGCTTCGCCCGCATCGACGGCAAAATGTCCTCCATCAGTCGTGATAACTCCACCCTGCGATT CTCCACCGATCCATCATGCACTGTCCTCCTCGCTAGCTTGAGCGTCTGCAGCGTTGGCTTGAACCTCGTGGCAGC TAACCAGGCTATCCTGTGCGATAGCTGGTGGGCTCCCGCCATCGAAGACCAAGCTGTCGATCGTGTATACCGGCT GGGTCAGACACGCGAAACTACTGTGTGGAGACTTGTTATGGAGGATAGTATTGAGGATCGTGTGCTGGCTATTCA GGAGAATAAGCGGAAGTTGATGCTCGAGGCGTTCAGGGAGACAGCGACGAGGAAAAAGGTGGATGATAGAGCGAC GAGGGTGGCAGATTTGGAGAAGTTGTTGAAGTAG |