© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g1456.t1 |
| Gene name | |
| Location | scaffold_006:548742..550490 |
| Strand | + |
| Gene length (bp) | 1748 |
| Transcript length (bp) | 1434 |
| Coding sequence length (bp) | 1434 |
| Protein length (aa) | 478 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01062 | Bestrophin | Bestrophin, RFP-TM, chloride channel | 6.8E-46 | 80 | 394 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005254 | chloride channel activity | Yes |
| GO:0005215 | transporter activity | No |
| GO:0005216 | ion channel activity | No |
| GO:0015267 | channel activity | No |
| GO:0015108 | chloride transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005253 | anion channel activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0008509 | anion transmembrane transporter activity | No |
| GO:0015103 | inorganic anion transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 86 | 108 | 22 |
| 2 | 118 | 137 | 19 |
| 3 | 328 | 350 | 22 |
| 4 | 355 | 374 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g1456.t1 MGDEASHDNHLAPAADHDVPAGVGANELREPPRGRLTPRPSFLENLASSREKQFMLGRRNSSEIDRYFHGPRDLD RHSKWPIFLRMHGSIMPKMILPLTFVAAWATVITCISKFVHNIGINDILLTVTGFVVSLALSFRSSTAYERWADG RKYWALLNQTSRNLARTIWVNTAERAGEEGKEDLLAKLTAMNLILAFAVSLKHKLRFEPDVGYDDLAGLVAHLDT FAKEAHDRQVVQPPKKTPWKSVGEYLGVSFAESNPRKLVKRSKKPLGHLPLEILNHLSAYVDRCIANNTLNVSLH QGQAITALSTLNEVLTGTERVLDTPLPAAYSISIAQIAWIYVLVLPFQLYDFLEWVTIPASVVAAYIILGLAFIG SEIENPFGQDVNDLPLDTYCRQLAVELDIITAMPPPKLDEFGTREDNFVLFPLSTSGYPEWKDRSVEEIRAALRA KVVANYPSAAMSDAATMIGSVRSKQSV* |
| Coding | >Ani_SJS72_1|g1456.t1 ATGGGTGACGAAGCAAGCCACGATAACCACCTGGCACCCGCCGCGGACCATGATGTGCCTGCTGGCGTCGGAGCA AATGAACTCAGAGAGCCCCCACGAGGACGCTTGACGCCTCGTCCATCTTTTCTGGAGAACCTCGCCAGTTCCAGA GAAAAACAGTTTATGTTGGGAAGACGCAACTCTAGCGAAATCGATCGATATTTTCACGGACCGCGAGATCTTGAT CGACACTCCAAATGGCCCATCTTCCTTCGAATGCATGGCAGTATCATGCCGAAAATGATTCTGCCACTTACCTTT GTCGCAGCTTGGGCCACCGTCATTACCTGCATCTCCAAGTTTGTCCACAACATCGGCATCAACGATATTCTTTTG ACAGTTACCGGTTTCGTGGTCAGTTTGGCGCTGTCCTTCCGCAGTTCGACAGCATATGAGAGATGGGCGGATGGA AGAAAGTACTGGGCACTCCTCAATCAGACGTCTCGCAACCTCGCACGTACCATCTGGGTCAACACGGCAGAACGT GCAGGAGAGGAGGGCAAGGAGGATTTGCTGGCCAAACTGACGGCCATGAATCTCATTCTGGCATTTGCCGTTTCC CTCAAACATAAACTGCGATTCGAACCCGATGTTGGCTACGACGATCTAGCCGGTCTGGTTGCACACCTCGACACG TTTGCCAAAGAAGCCCACGACCGCCAAGTGGTTCAGCCCCCAAAAAAGACGCCATGGAAGTCAGTCGGTGAATAC CTGGGTGTTTCCTTTGCCGAGTCCAACCCGAGAAAGCTTGTCAAGCGGTCCAAGAAGCCCTTGGGCCATCTTCCT CTTGAGATCTTGAACCATCTCTCCGCATACGTCGACCGGTGCATCGCCAACAATACTCTCAACGTCAGTCTCCAC CAAGGACAAGCCATCACCGCTCTGTCTACCCTGAACGAAGTCCTCACCGGCACCGAACGCGTCCTGGATACTCCT CTTCCCGCCGCATACAGCATCTCCATCGCCCAGATTGCCTGGATCTACGTCCTCGTGCTGCCCTTCCAGCTGTAC GACTTTCTTGAATGGGTGACCATTCCGGCTTCCGTCGTTGCCGCCTACATCATTCTTGGACTCGCCTTCATCGGC AGCGAAATTGAGAACCCCTTCGGCCAAGATGTCAACGATCTCCCTCTTGATACTTACTGCCGCCAGCTCGCCGTC GAGCTTGATATCATCACCGCCATGCCCCCGCCCAAACTGGACGAGTTCGGCACGCGCGAGGACAACTTCGTCCTC TTCCCTCTCAGCACATCCGGATACCCTGAATGGAAGGACCGCTCGGTCGAAGAGATTCGCGCCGCTCTGAGGGCG AAGGTGGTGGCCAATTACCCGTCCGCAGCGATGTCGGATGCGGCAACGATGATAGGAAGTGTGCGAAGCAAGCAG TCTGTTTAG |
| Transcript | >Ani_SJS72_1|g1456.t1 ATGGGTGACGAAGCAAGCCACGATAACCACCTGGCACCCGCCGCGGACCATGATGTGCCTGCTGGCGTCGGAGCA AATGAACTCAGAGAGCCCCCACGAGGACGCTTGACGCCTCGTCCATCTTTTCTGGAGAACCTCGCCAGTTCCAGA GAAAAACAGTTTATGTTGGGAAGACGCAACTCTAGCGAAATCGATCGATATTTTCACGGACCGCGAGATCTTGAT CGACACTCCAAATGGCCCATCTTCCTTCGAATGCATGGCAGTATCATGCCGAAAATGATTCTGCCACTTACCTTT GTCGCAGCTTGGGCCACCGTCATTACCTGCATCTCCAAGTTTGTCCACAACATCGGCATCAACGATATTCTTTTG ACAGTTACCGGTTTCGTGGTCAGTTTGGCGCTGTCCTTCCGCAGTTCGACAGCATATGAGAGATGGGCGGATGGA AGAAAGTACTGGGCACTCCTCAATCAGACGTCTCGCAACCTCGCACGTACCATCTGGGTCAACACGGCAGAACGT GCAGGAGAGGAGGGCAAGGAGGATTTGCTGGCCAAACTGACGGCCATGAATCTCATTCTGGCATTTGCCGTTTCC CTCAAACATAAACTGCGATTCGAACCCGATGTTGGCTACGACGATCTAGCCGGTCTGGTTGCACACCTCGACACG TTTGCCAAAGAAGCCCACGACCGCCAAGTGGTTCAGCCCCCAAAAAAGACGCCATGGAAGTCAGTCGGTGAATAC CTGGGTGTTTCCTTTGCCGAGTCCAACCCGAGAAAGCTTGTCAAGCGGTCCAAGAAGCCCTTGGGCCATCTTCCT CTTGAGATCTTGAACCATCTCTCCGCATACGTCGACCGGTGCATCGCCAACAATACTCTCAACGTCAGTCTCCAC CAAGGACAAGCCATCACCGCTCTGTCTACCCTGAACGAAGTCCTCACCGGCACCGAACGCGTCCTGGATACTCCT CTTCCCGCCGCATACAGCATCTCCATCGCCCAGATTGCCTGGATCTACGTCCTCGTGCTGCCCTTCCAGCTGTAC GACTTTCTTGAATGGGTGACCATTCCGGCTTCCGTCGTTGCCGCCTACATCATTCTTGGACTCGCCTTCATCGGC AGCGAAATTGAGAACCCCTTCGGCCAAGATGTCAACGATCTCCCTCTTGATACTTACTGCCGCCAGCTCGCCGTC GAGCTTGATATCATCACCGCCATGCCCCCGCCCAAACTGGACGAGTTCGGCACGCGCGAGGACAACTTCGTCCTC TTCCCTCTCAGCACATCCGGATACCCTGAATGGAAGGACCGCTCGGTCGAAGAGATTCGCGCCGCTCTGAGGGCG AAGGTGGTGGCCAATTACCCGTCCGCAGCGATGTCGGATGCGGCAACGATGATAGGAAGTGTGCGAAGCAAGCAG TCTGTTTAG |
| Gene | >Ani_SJS72_1|g1456.t1 ATGGGTGACGAAGCAAGCCACGATAACCACCTGGCACCCGCCGCGGACCATGATGTGCCTGCTGGCGTCGGAGCA AATGAACTCAGAGAGCCCCCACGAGGACGCTTGACGCCTCGTCCATCTTTTCTGGAGAACCTCGCCAGTTCCAGA GAAAAACAGTTTATGTTGGGAAGACGCAACTCTAGCGAAATCGATCGATATTTTGTATGTCAATATCTGGTCATG GATTGGGAGGGACCGTTTGGACTAACGGGATGATGAATAGCACGGACCGCGAGATCTTGATCGACACTCCAAATG GCCCATCTTCCTTCGAATGCATGGCAGTATCATGCCGAAAATGATTCTGCCACTTACCTTTGTCGCAGCTTGGGC CACCGTCATTACCTGCATCTCCAAGTTTGTCCACAACAGTAGGTTTGTCTTGATCAGATTGTGACTGGACGCTGA CCCTATCTTCACCAGTCGGCATCAACGATATTCTTTTGACAGTTACCGGTTTCGTGGTCAGTTTGGCGCTGTCCT TCCGCAGTTCGACAGCATATGAGAGGTATGTCTTATCCTTTACCTACAGATAAACAGTTGTTAATCTCCATAGAT GGGCGGATGGAAGAAAGTACTGGGCACTCCTCAATCAGACGTCTCGCAACCTCGCACGTACCATCTGGGTCAACA CGGCAGAACGTGCAGGAGAGGAGGGCAAGGAGGATTTGCTGGCCAAACTGTAAGACGCTTCATGTCCTTGTCATC ATAAATCATACTAACAAGCGTAGGACGGCCATGAATCTCATTCTGGCATTTGCCGTTTCCCTCAAACATAAACTG CGATTCGAACCCGATGTTGGCTACGACGATCTAGCCGGTCTGGTTGCACACCTCGACACGTTTGCCAAAGAAGCC CACGACCGCCAAGTGGTTCAGCCCCCAAAAAAGACGCCATGGAAGTCAGTCGGTGAATACCTGGGTGTTTCCTTT GCCGAGTCCAACCCGAGAAAGCTTGTCAAGCGGTCCAAGAAGCCCTTGGGCCATCTTCCTCTTGAGATCTTGAAC CATCTCTCCGCATACGTCGACCGGTGCATCGCCAACAATACTCTCAACGTCAGTCTCCACCAAGGACAAGCCAGT ATGTACCTCATCCCCAATAACTTTTCGGAATATACCTTCTAATTTTCACAGTCACCGCTCTGTCTACCCTGAACG AAGTCCTCACCGGCACCGAACGCGTCCTGGATACTCCTCTTCCCGCCGCATACAGCATCTCCATCGCCCAGATTG CCTGGATCTACGTCCTCGTGCTGCCCTTCCAGCTGTACGACTTTCTTGAATGGGTGACCATTCCGGCTTCCGTCG GTGAGTATTCCCATCCAGTCAACAGAATTCTCTGGTCTAATAATATAACAGTTGCCGCCTACATCATTCTTGGAC TCGCCTTCATCGGCAGCGAAATTGAGAACCCCTTCGGCCAAGATGTCAACGATCTCCCTCTTGATACTTACTGCC GCCAGCTCGCCGTCGAGCTTGATATCATCACCGCCATGCCCCCGCCCAAACTGGACGAGTTCGGCACGCGCGAGG ACAACTTCGTCCTCTTCCCTCTCAGCACATCCGGATACCCTGAATGGAAGGACCGCTCGGTCGAAGAGATTCGCG CCGCTCTGAGGGCGAAGGTGGTGGCCAATTACCCGTCCGCAGCGATGTCGGATGCGGCAACGATGATAGGAAGTG TGCGAAGCAAGCAGTCTGTTTAG |