Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS72_1\|g1342.t1
Gene name
Location	scaffold_006:217702..218881
Strand	+
Gene length (bp)	1179
Transcript length (bp)	972
Coding sequence length (bp)	972
Protein length (aa)	324

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00544	Pectate_lyase_4	Pectate lyase	1.7E-42	84	260

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS72_1\|g1342.t1 MTNFKWIVAAAGLLFGQVLAAPTATSTHAKRATVSDAAFGYASLNGGTTGGAGGTTTTVSSYAAFTSAVSGDDAK VVYVDGTIKQTADQVKIGSNTSIIGKDANAILEGFGVLVKEKENVIIRNLGVSKVLADNGDAIGVQYSNNVWIDH CDVSSDRDHDKDYYDGLIDITHGSDYVTVSNTFIHDHWKASLVGHSDSNEDEDSGHLTVTYANNYWYNVNSRAPS FRFGTGHVYNSYYLDVSDGINTRDGAQLLVESNQFVDSKKALYSTDDGYAVSNDNDFGDSENTAEEGTLTSMPYD YTLLGSANVKAAVVGTAGQTLTF*
Coding	>Ani_SJS72_1\|g1342.t1 ATGACCAACTTCAAGTGGATCGTTGCCGCCGCCGGTCTCCTGTTTGGACAGGTCCTGGCTGCTCCTACTGCCACT TCTACCCATGCCAAGCGCGCAACCGTCAGCGACGCTGCGTTCGGCTATGCTAGCCTGAACGGCGGCACCACCGGT GGTGCCGGCGGTACTACCACTACCGTCTCGTCCTACGCTGCCTTCACCTCCGCTGTCTCCGGCGATGACGCCAAG GTCGTCTACGTCGACGGCACCATCAAGCAGACCGCCGACCAGGTCAAGATTGGCAGCAACACCTCCATCATCGGC AAGGACGCCAACGCCATCCTCGAGGGATTCGGAGTTCTCGTCAAGGAGAAGGAGAACGTTATCATCCGTAACCTC GGAGTCTCCAAGGTCCTTGCTGACAACGGCGATGCCATTGGTGTCCAGTACTCCAACAACGTCTGGATCGACCAC TGCGATGTCTCCTCCGACCGTGACCACGACAAGGACTACTACGACGGTCTGATTGACATTACCCACGGCTCCGAC TACGTGACCGTCTCCAACACCTTCATCCACGACCACTGGAAGGCTTCCCTGGTCGGCCACTCCGATAGCAACGAA GACGAGGACAGCGGCCACCTCACCGTCACCTACGCCAACAACTACTGGTACAACGTCAACTCCCGCGCTCCCTCT TTCCGCTTCGGTACCGGCCACGTCTACAACAGCTACTACCTGGACGTCAGCGACGGCATCAACACCCGTGACGGC GCCCAGCTGCTCGTCGAGTCCAACCAGTTCGTCGACTCCAAGAAGGCTCTCTACTCCACCGACGATGGCTACGCC GTCTCCAACGACAACGACTTCGGTGATTCTGAGAACACTGCCGAGGAGGGTACCCTGACTTCCATGCCTTATGAC TACACCCTTCTTGGCTCCGCCAACGTTAAGGCTGCTGTCGTCGGCACTGCCGGTCAGACTCTTACTTTCTAA
Transcript	>Ani_SJS72_1\|g1342.t1 ATGACCAACTTCAAGTGGATCGTTGCCGCCGCCGGTCTCCTGTTTGGACAGGTCCTGGCTGCTCCTACTGCCACT TCTACCCATGCCAAGCGCGCAACCGTCAGCGACGCTGCGTTCGGCTATGCTAGCCTGAACGGCGGCACCACCGGT GGTGCCGGCGGTACTACCACTACCGTCTCGTCCTACGCTGCCTTCACCTCCGCTGTCTCCGGCGATGACGCCAAG GTCGTCTACGTCGACGGCACCATCAAGCAGACCGCCGACCAGGTCAAGATTGGCAGCAACACCTCCATCATCGGC AAGGACGCCAACGCCATCCTCGAGGGATTCGGAGTTCTCGTCAAGGAGAAGGAGAACGTTATCATCCGTAACCTC GGAGTCTCCAAGGTCCTTGCTGACAACGGCGATGCCATTGGTGTCCAGTACTCCAACAACGTCTGGATCGACCAC TGCGATGTCTCCTCCGACCGTGACCACGACAAGGACTACTACGACGGTCTGATTGACATTACCCACGGCTCCGAC TACGTGACCGTCTCCAACACCTTCATCCACGACCACTGGAAGGCTTCCCTGGTCGGCCACTCCGATAGCAACGAA GACGAGGACAGCGGCCACCTCACCGTCACCTACGCCAACAACTACTGGTACAACGTCAACTCCCGCGCTCCCTCT TTCCGCTTCGGTACCGGCCACGTCTACAACAGCTACTACCTGGACGTCAGCGACGGCATCAACACCCGTGACGGC GCCCAGCTGCTCGTCGAGTCCAACCAGTTCGTCGACTCCAAGAAGGCTCTCTACTCCACCGACGATGGCTACGCC GTCTCCAACGACAACGACTTCGGTGATTCTGAGAACACTGCCGAGGAGGGTACCCTGACTTCCATGCCTTATGAC TACACCCTTCTTGGCTCCGCCAACGTTAAGGCTGCTGTCGTCGGCACTGCCGGTCAGACTCTTACTTTCTAA
Gene	>Ani_SJS72_1\|g1342.t1 ATGACCAACTTCAAGTGGATCGTTGCCGCCGCCGGTCTCCTGTTTGGACAGGTCCTGGCTGCTCCTACTGCCACT TCTACCCATGCCAAGCGCGCAACCGTCAGCGACGTAAGCACCCTCCCTGTGAAGAACCCCACAGATATTGACATT GGCAGGCTGCGTTCGGCTATGCTAGCCTGAACGGCGGCACCACCGGTGGTGCCGGCGGTACTACCACTACCGTCT CGTCCTACGCTGCCTTCACCTCCGCTGTCTCCGGCGATGACGCCAAGGTCGTCTACGTCGACGGCACCATCAAGC AGACCGCCGACCAGGTCAAGATTGGCAGCAACACCTCCATCATCGGCAAGGACGCCAACGCCATCCTCGAGGGAT TCGGAGTGTAAGCACGTCCCAACAAGAGGGAGCTGAATTAAGCTTACATGCAACAGTCTCGTCAAGGAGAAGGAG AACGTTATCATCCGTAACCTCGGAGTCTCCAAGGTCCTTGCTGACAACGGCGATGCCATTGGTGTCCGTACGTGA CACCCACTCATCCTGCACACCCTACCAGATGCTAATTCAAGCAGAGTACTCCAACAACGTCTGGATCGACCACTG CGATGTCTCCTCCGACCGTGACCACGACAAGGACTACTACGACGGTCTGATTGACGTATGCCACCCACCACCACC ATCATACCAAAAGGGTCCTCACTCACTAACAACTACTAGATTACCCACGGCTCCGACTACGTGACCGTCTCCAAC ACCTTCATCCACGACCACTGGAAGGCTTCCCTGGTCGGCCACTCCGATAGCAACGAAGACGAGGACAGCGGCCAC CTCACCGTCACCTACGCCAACAACTACTGGTACAACGTCAACTCCCGCGCTCCCTCTTTCCGCTTCGGTACCGGC CACGTCTACAACAGCTACTACCTGGACGTCAGCGACGGCATCAACACCCGTGACGGCGCCCAGCTGCTCGTCGAG TCCAACCAGTTCGTCGACTCCAAGAAGGCTCTCTACTCCACCGACGATGGCTACGCCGTCTCCAACGACAACGAC TTCGGTGATTCTGAGAACACTGCCGAGGAGGGTACCCTGACTTCCATGCCTTATGACTACACCCTTCTTGGCTCC GCCAACGTTAAGGCTGCTGTCGTCGGCACTGCCGGTCAGACTCTTACTTTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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