© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g11092.t1 |
| Gene name | |
| Location | scaffold_187:21300..22336 |
| Strand | + |
| Gene length (bp) | 1036 |
| Transcript length (bp) | 912 |
| Coding sequence length (bp) | 912 |
| Protein length (aa) | 304 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01226 | Form_Nir_trans | Formate/nitrite transporter | 4.3E-73 | 13 | 260 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 32 | 54 | 22 |
| 2 | 69 | 91 | 22 |
| 3 | 112 | 134 | 22 |
| 4 | 165 | 184 | 19 |
| 5 | 196 | 218 | 22 |
| 6 | 238 | 260 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g11092.t1 MSLSIDAYTPTEVINLVARAGIAKGNTRLDKVFLSSVSAGCLLALACGTALSTNTSTWFQENAPGLIRTISALVF PYGLCMIILTGADLCTGSFMFTTVAALQRQLPWWKMLLHWFITFWGNLCGSLFVVAIIFGYGEVFSTDPYKSEVI SFATKKQVTPHFQQIFLRGIGCNWLVCLACFFGLQGRDLASKIMGIWWPIFAFVSLGFDHVVANMTFIPLAIWLD APDITVGLYVWKGIIPTLLGNIVGGGLFVGTYYWYMYLLQGESITLAGLRRQGMATSATATPATAGGKDDVEATA GAI* |
| Coding | >Ani_SJS72_1|g11092.t1 ATGTCTCTCAGTATAGACGCATACACCCCCACCGAAGTAATCAACCTCGTCGCCCGAGCAGGCATTGCCAAAGGC AATACCCGCCTCGACAAAGTCTTCCTCAGCTCCGTCTCCGCAGGATGTCTACTTGCCTTGGCGTGCGGAACCGCC CTCAGCACAAACACAAGTACCTGGTTCCAGGAGAATGCGCCGGGGTTGATTCGCACCATTAGCGCGCTGGTCTTT CCGTATGGATTGTGCATGATTATCTTAACCGGGGCGGATTTGTGCACGGGTTCATTTATGTTCACAACGGTCGCA GCCCTACAGCGCCAACTCCCCTGGTGGAAGATGCTCCTGCACTGGTTCATCACATTTTGGGGAAACCTATGCGGA TCGCTATTTGTCGTGGCGATCATCTTCGGCTACGGTGAAGTCTTCTCCACAGACCCCTACAAAAGCGAAGTCATC TCCTTCGCCACCAAAAAGCAAGTCACTCCGCACTTCCAACAGATCTTCCTCCGCGGCATCGGATGCAACTGGCTC GTTTGTCTCGCCTGTTTCTTCGGTCTACAGGGTCGTGATCTCGCCTCTAAGATCATGGGCATCTGGTGGCCGATC TTCGCGTTCGTATCGCTGGGATTCGATCACGTCGTCGCCAATATGACCTTCATTCCGCTGGCCATTTGGCTGGAT GCGCCGGACATTACGGTGGGACTGTACGTATGGAAGGGGATTATCCCGACGTTGTTGGGGAATATTGTCGGGGGT GGGCTTTTTGTAGGAACGTACTACTGGTACATGTATCTCTTGCAAGGGGAGAGTATCACTCTGGCTGGGTTGCGC AGACAGGGCATGGCTACTTCGGCGACAGCGACGCCGGCCACGGCAGGTGGGAAGGATGATGTTGAGGCGACTGCT GGGGCGATTTAG |
| Transcript | >Ani_SJS72_1|g11092.t1 ATGTCTCTCAGTATAGACGCATACACCCCCACCGAAGTAATCAACCTCGTCGCCCGAGCAGGCATTGCCAAAGGC AATACCCGCCTCGACAAAGTCTTCCTCAGCTCCGTCTCCGCAGGATGTCTACTTGCCTTGGCGTGCGGAACCGCC CTCAGCACAAACACAAGTACCTGGTTCCAGGAGAATGCGCCGGGGTTGATTCGCACCATTAGCGCGCTGGTCTTT CCGTATGGATTGTGCATGATTATCTTAACCGGGGCGGATTTGTGCACGGGTTCATTTATGTTCACAACGGTCGCA GCCCTACAGCGCCAACTCCCCTGGTGGAAGATGCTCCTGCACTGGTTCATCACATTTTGGGGAAACCTATGCGGA TCGCTATTTGTCGTGGCGATCATCTTCGGCTACGGTGAAGTCTTCTCCACAGACCCCTACAAAAGCGAAGTCATC TCCTTCGCCACCAAAAAGCAAGTCACTCCGCACTTCCAACAGATCTTCCTCCGCGGCATCGGATGCAACTGGCTC GTTTGTCTCGCCTGTTTCTTCGGTCTACAGGGTCGTGATCTCGCCTCTAAGATCATGGGCATCTGGTGGCCGATC TTCGCGTTCGTATCGCTGGGATTCGATCACGTCGTCGCCAATATGACCTTCATTCCGCTGGCCATTTGGCTGGAT GCGCCGGACATTACGGTGGGACTGTACGTATGGAAGGGGATTATCCCGACGTTGTTGGGGAATATTGTCGGGGGT GGGCTTTTTGTAGGAACGTACTACTGGTACATGTATCTCTTGCAAGGGGAGAGTATCACTCTGGCTGGGTTGCGC AGACAGGGCATGGCTACTTCGGCGACAGCGACGCCGGCCACGGCAGGTGGGAAGGATGATGTTGAGGCGACTGCT GGGGCGATTTAG |
| Gene | >Ani_SJS72_1|g11092.t1 ATGTCTCTCAGTATAGACGCATACACCCCCACCGAAGTAATCAACCTCGTCGCCCGAGCAGGCATTGCCAAAGGC AATACCCGCCTCGACAAAGTCTTCCTCAGCTCCGTCTCCGCAGGATGTCTACTTGCCTTGGCGTGCGGAACCGCC CTCAGCACAAACACAAGTACCTGGTTCCAGGAGAATGCGCCGGGGTTGATTCGCACCATTAGCGCGCTGGTCTTT CCGTATGGATTGTGCATGATTATCTTAACCGGGGCGGATTTGTGCACGGGTTCATTTATGGTATACCCCCCTCCC TTTACTCCACTCCAACTGTGGATAATGTAGTACTAATATACCCAGTTCACAACGGTCGCAGCCCTACAGCGCCAA CTCCCCTGGTGGAAGATGCTCCTGCACTGGTTCATCACATTTTGGGGAAACCTATGCGGATCGCTATTTGTCGTG GCGATCATCTTCGGCTGTATTTCCCCCCTCCCCCCTTCTCCACACCCACACCCTAACCTAAAATCCTAACAACTG CACAGACGGTGAAGTCTTCTCCACAGACCCCTACAAAAGCGAAGTCATCTCCTTCGCCACCAAAAAGCAAGTCAC TCCGCACTTCCAACAGATCTTCCTCCGCGGCATCGGATGCAACTGGCTCGTTTGTCTCGCCTGTTTCTTCGGTCT ACAGGGTCGTGATCTCGCCTCTAAGATCATGGGCATCTGGTGGCCGATCTTCGCGTTCGTATCGCTGGGATTCGA TCACGTCGTCGCCAATATGACCTTCATTCCGCTGGCCATTTGGCTGGATGCGCCGGACATTACGGTGGGACTGTA CGTATGGAAGGGGATTATCCCGACGTTGTTGGGGAATATTGTCGGGGGTGGGCTTTTTGTAGGAACGTACTACTG GTACATGTATCTCTTGCAAGGGGAGAGTATCACTCTGGCTGGGTTGCGCAGACAGGGCATGGCTACTTCGGCGAC AGCGACGCCGGCCACGGCAGGTGGGAAGGATGATGTTGAGGCGACTGCTGGGGCGATTTAG |