© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g10827.t1 |
| Gene name | |
| Location | scaffold_161:34583..35309 |
| Strand | - |
| Gene length (bp) | 726 |
| Transcript length (bp) | 564 |
| Coding sequence length (bp) | 564 |
| Protein length (aa) | 188 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10032 | Pho88 | Phosphate transport (Pho88) | 6.6E-81 | 3 | 183 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0045047 | protein targeting to ER | Yes |
| GO:0005783 | endoplasmic reticulum | Yes |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0008150 | biological_process | No |
| GO:0051179 | localization | No |
| GO:0008104 | protein localization | No |
| GO:0033036 | macromolecule localization | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0070972 | protein localization to endoplasmic reticulum | No |
| GO:0046907 | intracellular transport | No |
| GO:0072599 | establishment of protein localization to endoplasmic reticulum | No |
| GO:0006605 | protein targeting | No |
| GO:0051641 | cellular localization | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0071702 | organic substance transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0006886 | intracellular protein transport | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0006810 | transport | No |
| GO:0043229 | intracellular organelle | No |
| GO:0072594 | establishment of protein localization to organelle | No |
| GO:0043226 | organelle | No |
| GO:0015031 | protein transport | No |
| GO:0005575 | cellular_component | No |
| GO:0009987 | cellular process | No |
| GO:0033365 | protein localization to organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 49 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g10827.t1 MVSPQVTNLAIIVVMMQLAKKVPFEDPDVLMLVRGMYILSNVIILGVYLYTQSKINKKNDLTTLKYVEPSPMGSG EEPKPVTTTNMEYDKGQLRQLMRSQLMGVGMMGVMHLYFKYTNPLLIQSIIPLKGAFESNLVKIHVFGKPATGDL QRPFKANNSFLNQGQIKSDKASVENAEKNWRGGVKEE* |
| Coding | >Ani_SJS72_1|g10827.t1 ATGGTGTCTCCTCAAGTTACCAACCTGGCCATCATCGTGGTGATGATGCAGCTAGCGAAGAAGGTTCCCTTCGAG GACCCCGATGTCCTTATGCTTGTCCGTGGCATGTACATCCTGTCCAACGTGATCATTCTGGGAGTGTACTTGTAC ACTCAGTCGAAGATCAACAAAAAGAATGATCTGACTACCCTGAAATACGTGGAGCCTTCTCCTATGGGCAGCGGC GAGGAGCCCAAGCCCGTCACCACTACCAACATGGAGTACGACAAGGGACAGCTGCGCCAGCTGATGAGGAGCCAG CTGATGGGTGTGGGTATGATGGGTGTGATGCACCTGTACTTTAAGTACACCAACCCCCTCCTGATCCAGTCCATC ATTCCTCTCAAGGGTGCCTTCGAGTCGAACCTGGTCAAGATCCACGTCTTTGGCAAGCCTGCGACCGGTGACCTT CAGCGCCCCTTCAAGGCCAACAACAGCTTCCTGAACCAGGGCCAGATCAAGAGCGACAAGGCCTCCGTTGAGAAC GCTGAGAAGAACTGGAGGGGCGGTGTCAAGGAGGAGTAA |
| Transcript | >Ani_SJS72_1|g10827.t1 ATGGTGTCTCCTCAAGTTACCAACCTGGCCATCATCGTGGTGATGATGCAGCTAGCGAAGAAGGTTCCCTTCGAG GACCCCGATGTCCTTATGCTTGTCCGTGGCATGTACATCCTGTCCAACGTGATCATTCTGGGAGTGTACTTGTAC ACTCAGTCGAAGATCAACAAAAAGAATGATCTGACTACCCTGAAATACGTGGAGCCTTCTCCTATGGGCAGCGGC GAGGAGCCCAAGCCCGTCACCACTACCAACATGGAGTACGACAAGGGACAGCTGCGCCAGCTGATGAGGAGCCAG CTGATGGGTGTGGGTATGATGGGTGTGATGCACCTGTACTTTAAGTACACCAACCCCCTCCTGATCCAGTCCATC ATTCCTCTCAAGGGTGCCTTCGAGTCGAACCTGGTCAAGATCCACGTCTTTGGCAAGCCTGCGACCGGTGACCTT CAGCGCCCCTTCAAGGCCAACAACAGCTTCCTGAACCAGGGCCAGATCAAGAGCGACAAGGCCTCCGTTGAGAAC GCTGAGAAGAACTGGAGGGGCGGTGTCAAGGAGGAGTAA |
| Gene | >Ani_SJS72_1|g10827.t1 ATGGTGTCTCCTCAAGTGTAAGTCAATCCTGCGTTATTCCTGCGCGCGACATGCACAACCGTGGTCTGCTGTCTC GTGATGCTACTCGAGGAATAAAAACTGATTTGTCGTCTGTCTTGCAGTACCAACCTGGCCATCATCGTGGTGATG ATGCAGCTAGCGAAGAAGGTTCCCTTCGAGGACCCCGATGTCCTTATGCTTGTCCGTGGCATGTACATCCTGTCC AACGTGATCATTCTGGGAGTGTACTTGTACACTCAGTCGAAGATCAACAAAAAGAATGGTATGCTTCGTGTCCTT GCTTTCTTTAAGCTACGGTCCTCTAATAATCTGTGATCAGATCTGACTACCCTGAAATACGTGGAGCCTTCTCCT ATGGGCAGCGGCGAGGAGCCCAAGCCCGTCACCACTACCAACATGGAGTACGACAAGGGACAGCTGCGCCAGCTG ATGAGGAGCCAGCTGATGGGTGTGGGTATGATGGGTGTGATGCACCTGTACTTTAAGTACACCAACCCCCTCCTG ATCCAGTCCATCATTCCTCTCAAGGGTGCCTTCGAGTCGAACCTGGTCAAGATCCACGTCTTTGGCAAGCCTGCG ACCGGTGACCTTCAGCGCCCCTTCAAGGCCAACAACAGCTTCCTGAACCAGGGCCAGATCAAGAGCGACAAGGCC TCCGTTGAGAACGCTGAGAAGAACTGGAGGGGCGGTGTCAAGGAGGAGTAA |