Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS72_1|g10608.t1
Gene name
Locationscaffold_147:56239..56599
Strand-
Gene length (bp)360
Transcript length (bp)240
Coding sequence length (bp)240
Protein length (aa) 80

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06624 RAMP4 Ribosome associated membrane protein RAMP4 3.3E-22 2 63

GO

GO Term Description Terminal node
GO:0005783 endoplasmic reticulum Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No
GO:0043226 organelle No
GO:0043229 intracellular organelle No
GO:0043231 intracellular membrane-bounded organelle No
GO:0043227 membrane-bounded organelle No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 36 0.5

Transmembrane Domains

Domain # Start End Length
1 41 63 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS72_1|g10608.t1
MAQTPQQRKANERFAKQESAKRGKGKTVAKSKQTPRSPVSTVWVAILAFVVCGGIFLEILGIIPKLWSTMVASIN
RLML*
Coding >Ani_SJS72_1|g10608.t1
ATGGCTCAAACACCTCAGCAAAGGAAGGCCAACGAAAGGTTTGCGAAGCAGGAATCTGCAAAGCGTGGTAAAGGC
AAGACAGTTGCCAAGTCAAAGCAGACTCCAAGGTCGCCAGTGTCCACTGTGTGGGTGGCTATTCTCGCGTTCGTT
GTCTGTGGAGGAATCTTCCTTGAGATTCTGGGGATCATACCGAAGCTTTGGTCAACGATGGTCGCAAGCATCAAC
CGCCTAATGCTCTGA
Transcript >Ani_SJS72_1|g10608.t1
ATGGCTCAAACACCTCAGCAAAGGAAGGCCAACGAAAGGTTTGCGAAGCAGGAATCTGCAAAGCGTGGTAAAGGC
AAGACAGTTGCCAAGTCAAAGCAGACTCCAAGGTCGCCAGTGTCCACTGTGTGGGTGGCTATTCTCGCGTTCGTT
GTCTGTGGAGGAATCTTCCTTGAGATTCTGGGGATCATACCGAAGCTTTGGTCAACGATGGTCGCAAGCATCAAC
CGCCTAATGCTCTGA
Gene >Ani_SJS72_1|g10608.t1
ATGGTAGTCCATCTAGCCCCAATCGCCATGAATACTCTGAATTACGAAATATTGACTAAATACCCAGGCTCAAAC
ACCTCAGCAAAGGAAGGCCAACGAAAGGTTTGCGAAGCAGGAATCTGCAAAGCGTGGTAAAGGCAAGACAGTTGC
CAAGTCAAAGCAGACTCCAAGGTCGCCAGTGTCCACTGTGTGGGTGGGTATGTTGCGAAGTGCTTTACAGCCACC
TCAGTCACCAATGCTAACATTAAAACAGCTATTCTCGCGTTCGTTGTCTGTGGAGGAATCTTCCTTGAGATTCTG
GGGATCATACCGAAGCTTTGGTCAACGATGGTCGCAAGCATCAACCGCCTAATGCTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail