Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS72_1|g10460.t1
Gene name
Locationscaffold_140:37011..37402
Strand-
Gene length (bp)391
Transcript length (bp)342
Coding sequence length (bp)342
Protein length (aa) 114

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00319 SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) 3.8E-08 27 62

GO

GO Term Description Terminal node
GO:0046983 protein dimerization activity Yes
GO:0003677 DNA binding Yes
GO:0003676 nucleic acid binding No
GO:1901363 heterocyclic compound binding No
GO:0005515 protein binding No
GO:0003674 molecular_function No
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 26 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
SRF-type

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS72_1|g10460.t1
MPKEPNEQKSPKSPTSPKKMMRQKRDRRKKSLLRKAYEYSKLCDADVCLGIRIRESGQVTTFLSDSTGFWSGLSS
QLEIYYPRPTQKTEKDFDSNPTTDDDSAAAEDVKGGEQ*
Coding >Ani_SJS72_1|g10460.t1
ATGCCAAAGGAACCAAACGAGCAGAAGTCACCCAAGTCCCCAACCTCACCCAAGAAGATGATGCGACAGAAACGA
GACCGGCGCAAAAAGAGCCTCTTACGAAAGGCCTACGAATACAGCAAGCTGTGTGATGCTGACGTCTGCCTGGGT
ATTCGCATTCGAGAGTCTGGCCAAGTCACTACATTTCTCTCCGATTCGACAGGATTCTGGTCAGGCCTTTCCTCG
CAACTAGAAATATACTATCCACGGCCGACTCAGAAAACGGAGAAGGATTTTGACTCCAATCCTACAACTGATGAT
GACTCAGCTGCAGCCGAAGACGTCAAAGGGGGAGAACAATGA
Transcript >Ani_SJS72_1|g10460.t1
ATGCCAAAGGAACCAAACGAGCAGAAGTCACCCAAGTCCCCAACCTCACCCAAGAAGATGATGCGACAGAAACGA
GACCGGCGCAAAAAGAGCCTCTTACGAAAGGCCTACGAATACAGCAAGCTGTGTGATGCTGACGTCTGCCTGGGT
ATTCGCATTCGAGAGTCTGGCCAAGTCACTACATTTCTCTCCGATTCGACAGGATTCTGGTCAGGCCTTTCCTCG
CAACTAGAAATATACTATCCACGGCCGACTCAGAAAACGGAGAAGGATTTTGACTCCAATCCTACAACTGATGAT
GACTCAGCTGCAGCCGAAGACGTCAAAGGGGGAGAACAATGA
Gene >Ani_SJS72_1|g10460.t1
ATGCCAAAGGAACCAAACGAGCAGAAGTCACCCAAGTCCCCAACCTCACCCAAGAAGATGATGCGACAGAAACGA
GACCGGCGCAAAAAGAGCCTCTTACGAAAGGCCTACGAATACAGCAAGCTGTGTGATGCTGACGTCTGCCTGGGT
ATTCGCATTCGAGAGTCTGGCCAAGTCACTACATTTCTCTCCGATTCGACAGGATTCTGGTCAGGCCTTTCCTCG
CAACTAGTACGTTTTCAGCATGCTTGCTGTCGGTATGTAAACTAACACTAAATAGGAAATATACTATCCACGGCC
GACTCAGAAAACGGAGAAGGATTTTGACTCCAATCCTACAACTGATGATGACTCAGCTGCAGCCGAAGACGTCAA
AGGGGGAGAACAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail