Protein ID | Ani_SJS72_1|g10460.t1 |
Gene name | |
Location | scaffold_140:37011..37402 |
Strand | - |
Gene length (bp) | 391 |
Transcript length (bp) | 342 |
Coding sequence length (bp) | 342 |
Protein length (aa) | 114 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00319 | SRF-TF | SRF-type transcription factor (DNA-binding and dimerisation domain) | 3.8E-08 | 27 | 62 |
GO Term | Description | Terminal node |
---|---|---|
GO:0046983 | protein dimerization activity | Yes |
GO:0003677 | DNA binding | Yes |
GO:0003676 | nucleic acid binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0005515 | protein binding | No |
GO:0003674 | molecular_function | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0005488 | binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 26 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
SRF-type |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS72_1|g10460.t1 MPKEPNEQKSPKSPTSPKKMMRQKRDRRKKSLLRKAYEYSKLCDADVCLGIRIRESGQVTTFLSDSTGFWSGLSS QLEIYYPRPTQKTEKDFDSNPTTDDDSAAAEDVKGGEQ* |
Coding | >Ani_SJS72_1|g10460.t1 ATGCCAAAGGAACCAAACGAGCAGAAGTCACCCAAGTCCCCAACCTCACCCAAGAAGATGATGCGACAGAAACGA GACCGGCGCAAAAAGAGCCTCTTACGAAAGGCCTACGAATACAGCAAGCTGTGTGATGCTGACGTCTGCCTGGGT ATTCGCATTCGAGAGTCTGGCCAAGTCACTACATTTCTCTCCGATTCGACAGGATTCTGGTCAGGCCTTTCCTCG CAACTAGAAATATACTATCCACGGCCGACTCAGAAAACGGAGAAGGATTTTGACTCCAATCCTACAACTGATGAT GACTCAGCTGCAGCCGAAGACGTCAAAGGGGGAGAACAATGA |
Transcript | >Ani_SJS72_1|g10460.t1 ATGCCAAAGGAACCAAACGAGCAGAAGTCACCCAAGTCCCCAACCTCACCCAAGAAGATGATGCGACAGAAACGA GACCGGCGCAAAAAGAGCCTCTTACGAAAGGCCTACGAATACAGCAAGCTGTGTGATGCTGACGTCTGCCTGGGT ATTCGCATTCGAGAGTCTGGCCAAGTCACTACATTTCTCTCCGATTCGACAGGATTCTGGTCAGGCCTTTCCTCG CAACTAGAAATATACTATCCACGGCCGACTCAGAAAACGGAGAAGGATTTTGACTCCAATCCTACAACTGATGAT GACTCAGCTGCAGCCGAAGACGTCAAAGGGGGAGAACAATGA |
Gene | >Ani_SJS72_1|g10460.t1 ATGCCAAAGGAACCAAACGAGCAGAAGTCACCCAAGTCCCCAACCTCACCCAAGAAGATGATGCGACAGAAACGA GACCGGCGCAAAAAGAGCCTCTTACGAAAGGCCTACGAATACAGCAAGCTGTGTGATGCTGACGTCTGCCTGGGT ATTCGCATTCGAGAGTCTGGCCAAGTCACTACATTTCTCTCCGATTCGACAGGATTCTGGTCAGGCCTTTCCTCG CAACTAGTACGTTTTCAGCATGCTTGCTGTCGGTATGTAAACTAACACTAAATAGGAAATATACTATCCACGGCC GACTCAGAAAACGGAGAAGGATTTTGACTCCAATCCTACAACTGATGATGACTCAGCTGCAGCCGAAGACGTCAA AGGGGGAGAACAATGA |