Fungal Genomics

at Utrecht University

PFAM Domain

General information

PFAM domainPF00004
Short nameAAA
Long nameATPase family associated with various cellular activities (AAA)
Proteins with at least one of this domain54
Total domain count63
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Ani_SJS72_1|g10341.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.1E-07 68 123
Ani_SJS72_1|g10618.t1 PF00533 BRCT BRCA1 C Terminus (BRCT) domain 2.7E-14 324 399
PF13401 AAA_22 AAA domain 4.3E-06 522 631
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-09 523 607
PF08519 RFC1 Replication factor RFC1 C terminal domain 5.0E-59 799 952
Ani_SJS72_1|g10621.t1 PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 7.7E-11 19 185
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-05 38 179
Ani_SJS72_1|g11110.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-18 59 182
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-41 340 468
PF17862 AAA_lid_3 AAA+ lid domain 4.0E-09 492 539
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-13 576 642
Ani_SJS72_1|g1150.t1 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 3.8E-28 10 255
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-22 480 618
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.4E-07 480 615
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 2.7E-68 705 910
Ani_SJS72_1|g1154.t1 PF08385 DHC_N1 Dynein heavy chain, N-terminal region 1 1.1E-128 266 846
PF08393 DHC_N2 Dynein heavy chain, N-terminal region 2 3.0E-117 1358 1758
PF12774 AAA_6 Hydrolytic ATP binding site of dynein motor region 6.4E-125 1900 2240
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.0E-08 2228 2363
PF17852 Dynein_AAA_lid Dynein heavy chain AAA lid domain 1.2E-16 2432 2551
PF12775 AAA_7 P-loop containing dynein motor region 3.9E-32 2563 2720
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.2E-04 2592 2721
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-04 2593 2716
PF12780 AAA_8 P-loop containing dynein motor region D4 8.0E-65 2890 3168
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.5E-05 2914 3070
PF12777 MT Microtubule-binding stalk of dynein motor 1.4E-39 3183 3514
PF12781 AAA_9 ATP-binding dynein motor region 1.8E-76 3544 3763
PF03028 Dynein_heavy Dynein heavy chain region D6 P-loop domain 5.0E-27 4002 4109
PF18198 AAA_lid_11 Dynein heavy chain AAA lid domain 1.0E-28 4142 4291
Ani_SJS72_1|g1394.t1 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.1E-11 131 185
PF05673 DUF815 Protein of unknown function (DUF815) 1.3E-05 239 309
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.3E-04 243 323
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-40 244 376
PF17862 AAA_lid_3 AAA+ lid domain 1.3E-10 399 443
Ani_SJS72_1|g1713.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.4E-12 635 746
PF17866 AAA_lid_6 AAA lid domain 3.8E-09 798 854
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.0E-16 911 1043
Ani_SJS72_1|g1825.t1 PF06480 FtsH_ext FtsH Extracellular 7.8E-10 250 350
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.1E-42 453 585
PF17862 AAA_lid_3 AAA+ lid domain 3.4E-12 616 653
PF01434 Peptidase_M41 Peptidase family M41 1.4E-64 669 851
Ani_SJS72_1|g2004.t1 PF04212 MIT MIT (microtubule interacting and transport) domain 1.4E-23 7 72
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.5E-42 168 296
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.3E-04 168 234
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 2.1E-29 370 430
Ani_SJS72_1|g2077.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-37 689 816
PF17862 AAA_lid_3 AAA+ lid domain 8.8E-09 839 874
Ani_SJS72_1|g2193.t1 PF13191 AAA_16 AAA ATPase domain 1.4E-14 275 439
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.9E-06 301 462
PF14629 ORC4_C Origin recognition complex (ORC) subunit 4 C-terminus 1.0E-48 477 720
Ani_SJS72_1|g2452.t1 PF08740 BCS1_N BCS1 N terminal 1.7E-49 68 273
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.8E-07 311 380
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.3E-07 419 475
Ani_SJS72_1|g2738.t1 PF02861 Clp_N Clp amino terminal domain, pathogenicity island component 3.2E-03 113 163
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.2E-15 224 343
PF17871 AAA_lid_9 AAA lid domain 1.1E-32 365 466
PF00158 Sigma54_activat Sigma-54 interaction domain 3.9E-05 630 746
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.1E-44 633 793
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.1E-09 634 753
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.7E-09 635 770
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.3E-23 801 883
Ani_SJS72_1|g2946.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-15 797 913
Ani_SJS72_1|g3123.t1 PF03215 Rad17 Rad17 P-loop domain 2.6E-09 31 92
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.3E-09 52 205
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.3E-15 71 201
PF08542 Rep_fac_C Replication factor C C-terminal domain 3.2E-19 291 380
Ani_SJS72_1|g3176.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.8E-40 219 350
Ani_SJS72_1|g3781.t1 PF03215 Rad17 Rad17 P-loop domain 7.8E-10 41 127
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 2.1E-11 61 214
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.8E-16 80 212
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.3E-14 299 384
Ani_SJS72_1|g3796.t1 PF05729 NACHT NACHT domain 2.0E-07 90 247
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-04 92 245
Ani_SJS72_1|g394.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.7E-37 533 676
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 8.2E-08 745 779
Ani_SJS72_1|g3960.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-13 412 531
Ani_SJS72_1|g4253.t1 PF13401 AAA_22 AAA domain 8.5E-07 375 480
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.5E-11 380 467
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-04 380 459
Ani_SJS72_1|g4308.t1 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 5.1E-11 61 116
PF07728 AAA_5 AAA domain (dynein-related subfamily) 6.2E-05 173 294
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-42 174 307
PF17862 AAA_lid_3 AAA+ lid domain 2.1E-09 330 372
Ani_SJS72_1|g4522.t1 PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.4E-05 373 442
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.3E-43 374 503
PF17862 AAA_lid_3 AAA+ lid domain 5.0E-10 526 569
PF01434 Peptidase_M41 Peptidase family M41 1.1E-56 584 763
Ani_SJS72_1|g4558.t1 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 3.0E-10 126 244
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-14 158 265
PF16193 AAA_assoc_2 AAA C-terminal domain 1.5E-22 297 366
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 2.1E-56 367 522
Ani_SJS72_1|g4922.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-42 632 767
PF17862 AAA_lid_3 AAA+ lid domain 1.6E-08 794 829
Ani_SJS72_1|g5069.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.7E-11 632 747
Ani_SJS72_1|g5881.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-07 142 254
Ani_SJS72_1|g60.t1 PF06068 TIP49 TIP49 P-loop domain 1.9E-154 20 362
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-05 72 125
PF17856 TIP49_C TIP49 AAA-lid domain 5.6E-21 368 433
Ani_SJS72_1|g6183.t1 PF13191 AAA_16 AAA ATPase domain 2.1E-08 354 455
PF13401 AAA_22 AAA domain 3.7E-09 376 487
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.4E-15 380 522
PF17872 AAA_lid_10 AAA lid domain 1.5E-11 553 587
Ani_SJS72_1|g6391.t1 PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 4.4E-11 184 256
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.5E-39 328 469
PF17862 AAA_lid_3 AAA+ lid domain 3.6E-09 496 536
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-11 610 736
Ani_SJS72_1|g6782.t1 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 2.1E-31 204 454
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-21 605 741
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.5E-07 605 729
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 8.5E-63 876 1082
Ani_SJS72_1|g6878.t1 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 2.7E-06 205 327
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-42 206 338
PF17862 AAA_lid_3 AAA+ lid domain 1.6E-09 362 398
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-43 513 642
PF17862 AAA_lid_3 AAA+ lid domain 6.9E-10 667 699
Ani_SJS72_1|g6931.t1 PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal 3.4E-29 130 219
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.1E-07 557 689
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-43 877 1003
PF17862 AAA_lid_3 AAA+ lid domain 2.3E-09 1034 1063
Ani_SJS72_1|g7114.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.3E-10 121 251
PF17871 AAA_lid_9 AAA lid domain 2.0E-34 259 361
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.8E-44 515 687
PF00158 Sigma54_activat Sigma-54 interaction domain 1.3E-04 518 620
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.2E-08 520 665
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-05 521 638
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 2.1E-27 694 774
Ani_SJS72_1|g7311.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-08 594 752
Ani_SJS72_1|g7318.t1 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 2.2E-18 44 124
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 9.0E-09 145 208
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.9E-47 259 388
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.1E-07 259 356
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.2E-05 259 377
PF17862 AAA_lid_3 AAA+ lid domain 3.9E-13 411 450
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.9E-47 533 665
PF17862 AAA_lid_3 AAA+ lid domain 1.2E-07 688 727
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.6E-05 738 785
Ani_SJS72_1|g7387.t1 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.7E-11 90 145
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.8E-08 202 324
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.2E-46 203 335
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.2E-08 203 296
Ani_SJS72_1|g7961.t1 PF13173 AAA_14 AAA domain 1.4E-06 63 167
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-10 64 181
PF01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase 4.7E-05 65 144
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 6.6E-07 105 184
PF08542 Rep_fac_C Replication factor C C-terminal domain 2.3E-20 250 336
Ani_SJS72_1|g8027.t1 PF08740 BCS1_N BCS1 N terminal 2.8E-48 58 249
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.5E-18 285 409
Ani_SJS72_1|g8139.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.2E-16 610 725
Ani_SJS72_1|g8156.t1 PF13191 AAA_16 AAA ATPase domain 6.7E-09 178 228
PF13401 AAA_22 AAA domain 6.1E-07 200 319
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.7E-11 205 331
PF09079 Cdc6_C CDC6, C terminal winged helix domain 1.1E-08 524 575
Ani_SJS72_1|g8476.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.0E-16 435 550
Ani_SJS72_1|g85.t1 PF07724 AAA_2 AAA domain (Cdc48 subfamily) 8.7E-37 184 455
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.8E-06 187 263
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.7E-14 188 292
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 4.4E-08 466 532
Ani_SJS72_1|g8738.t1 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.1E-06 56 104
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.8E-07 168 289
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.7E-43 169 301
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.6E-07 169 279
PF17862 AAA_lid_3 AAA+ lid domain 3.6E-13 325 367
Ani_SJS72_1|g8805.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-36 149 281
PF17862 AAA_lid_3 AAA+ lid domain 3.7E-08 306 342
Ani_SJS72_1|g8872.t1 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.7E-16 113 189
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-40 248 380
PF17862 AAA_lid_3 AAA+ lid domain 2.5E-07 403 437
Ani_SJS72_1|g8951.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.9E-18 643 761
Ani_SJS72_1|g9231.t1 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.1E-11 108 231
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.8E-07 140 256
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.2E-12 141 235
PF16193 AAA_assoc_2 AAA C-terminal domain 3.8E-22 279 348
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 1.9E-37 349 502
Ani_SJS72_1|g9235.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.7E-17 403 521
Ani_SJS72_1|g94.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.8E-19 41 155
Ani_SJS72_1|g9685.t1 PF07728 AAA_5 AAA domain (dynein-related subfamily) 6.5E-18 298 421
PF17867 AAA_lid_7 Midasin AAA lid domain 4.0E-20 450 562
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.2E-07 633 679
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.3E-08 794 883
PF17865 AAA_lid_5 Midasin AAA lid domain 1.8E-31 897 1001
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.6E-21 1067 1203
PF17867 AAA_lid_7 Midasin AAA lid domain 1.3E-10 1215 1308
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.3E-05 1358 1433
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.3E-11 1460 1554
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-04 1736 1770
PF07726 AAA_3 ATPase family associated with various cellular activities (AAA) 3.9E-11 1736 1875
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.7E-19 1736 1874
PF17867 AAA_lid_7 Midasin AAA lid domain 8.0E-12 1886 1981
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.4E-06 2044 2102
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.4E-08 2180 2268
Ani_SJS72_1|g9865.t1 PF06068 TIP49 TIP49 P-loop domain 1.2E-167 15 368
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 8.7E-07 38 92
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-07 67 117
PF17856 TIP49_C TIP49 AAA-lid domain 1.5E-20 375 441
Ani_SJS72_1|g9989.t1 PF07732 Cu-oxidase_3 Multicopper oxidase 1.3E-37 132 233
PF00394 Cu-oxidase Multicopper oxidase 2.7E-28 244 379
PF07731 Cu-oxidase_2 Multicopper oxidase 9.0E-31 514 600
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.1E-43 1676 1810

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