© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Sequences in assembly | 221 |
|---|---|
| Total assembly length (Mbp) | 35.71 |
| Assembly GC content (%) | 49.47 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 40 |
| N50 length (bp) | 269898 |
| Total repeats (#) | 12098 |
| Repetitive content (bp, %) | 677351 (1.9%) |
| Genes | 11114 |
| Gene length (median) | 1440 |
| Transcript length (median) | 1263 |
| Exon length (median) | 228 |
| CDS length (median) | 1263 |
| Protein length (median) | 421 |
| Spliced genes (total, %) | 9041 (81.35%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 311.26 |
| Coding content of assembly (bp, %) | 16790445 (47.02%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4094 |
| Genes with PFAM (total, %) | 8639 (77.73%) |
| Genes with GO (total, %) | 5582 (50.22%) |
| Genes with signalP (total, %) | 1000 (9.0%) |
| Genes with TMHMM (total, %) | 2358 (21.22%) |
| Genes annotated as TF (total, %) | 546 (4.91%) |
| Genes annotated as MEROPS protease (total, %) | 365 (3.28%) |
| Genes annotated as CAZyme (total, %) | 497 (4.47%) |
| Secondary metabolism gene cluster | 74 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.31% (Single-copy: 98.62%, Duplicated: 0.69%), Fragmented: 0.69%, Missing: 0.0% |