© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 268 |
|---|---|
| Total assembly length (Mbp) | 36.47 |
| Assembly GC content (%) | 49.51 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 40 |
| N50 length (bp) | 286370 |
| Total repeats (#) | 12692 |
| Repetitive content (bp, %) | 1030182 (2.83%) |
| Genes | 11297 |
| Gene length (median) | 1434 |
| Transcript length (median) | 1257 |
| Exon length (median) | 227 |
| CDS length (median) | 1257 |
| Protein length (median) | 419 |
| Spliced genes (total, %) | 9164 (81.12%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 309.8 |
| Coding content of assembly (bp, %) | 16957584 (46.5%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4099 |
| Genes with PFAM (total, %) | 8676 (76.8%) |
| Genes with GO (total, %) | 5592 (49.5%) |
| Genes with signalP (total, %) | 1006 (8.91%) |
| Genes with TMHMM (total, %) | 2372 (21.0%) |
| Genes annotated as TF (total, %) | 553 (4.9%) |
| Genes annotated as MEROPS protease (total, %) | 363 (3.21%) |
| Genes annotated as CAZyme (total, %) | 495 (4.38%) |
| Secondary metabolism gene cluster | 75 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.31% (Single-copy: 98.62%, Duplicated: 0.69%), Fragmented: 0.69%, Missing: 0.0% |