© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 377 |
|---|---|
| Total assembly length (Mbp) | 37.46 |
| Assembly GC content (%) | 49.48 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 38 |
| N50 length (bp) | 295553 |
| Total repeats (#) | 12821 |
| Repetitive content (bp, %) | 1117673 (2.98%) |
| Genes | 11540 |
| Gene length (median) | 1426 |
| Transcript length (median) | 1252 |
| Exon length (median) | 228 |
| CDS length (median) | 1252 |
| Protein length (median) | 417 |
| Spliced genes (total, %) | 9282 (80.43%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 308.08 |
| Coding content of assembly (bp, %) | 17247060 (46.04%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4098 |
| Genes with PFAM (total, %) | 8817 (76.4%) |
| Genes with GO (total, %) | 5695 (49.35%) |
| Genes with signalP (total, %) | 998 (8.65%) |
| Genes with TMHMM (total, %) | 2421 (20.98%) |
| Genes annotated as TF (total, %) | 562 (4.87%) |
| Genes annotated as MEROPS protease (total, %) | 382 (3.31%) |
| Genes annotated as CAZyme (total, %) | 503 (4.36%) |
| Secondary metabolism gene cluster | 73 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.97% (Single-copy: 98.28%, Duplicated: 0.69%), Fragmented: 1.03%, Missing: 0.0% |