© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 159 |
|---|---|
| Total assembly length (Mbp) | 35.38 |
| Assembly GC content (%) | 49.48 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 33 |
| N50 length (bp) | 362096 |
| Total repeats (#) | 11849 |
| Repetitive content (bp, %) | 643337 (1.82%) |
| Genes | 11046 |
| Gene length (median) | 1440 |
| Transcript length (median) | 1263 |
| Exon length (median) | 226 |
| CDS length (median) | 1263 |
| Protein length (median) | 421 |
| Spliced genes (total, %) | 8985 (81.34%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 312.19 |
| Coding content of assembly (bp, %) | 16692102 (47.18%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4088 |
| Genes with PFAM (total, %) | 8597 (77.83%) |
| Genes with GO (total, %) | 5564 (50.37%) |
| Genes with signalP (total, %) | 984 (8.91%) |
| Genes with TMHMM (total, %) | 2346 (21.24%) |
| Genes annotated as TF (total, %) | 545 (4.93%) |
| Genes annotated as MEROPS protease (total, %) | 367 (3.32%) |
| Genes annotated as CAZyme (total, %) | 492 (4.45%) |
| Secondary metabolism gene cluster | 73 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.31% (Single-copy: 98.97%, Duplicated: 0.34%), Fragmented: 0.69%, Missing: 0.0% |