© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g9962.t1 |
| Gene name | |
| Location | scaffold_101:40017..41640 |
| Strand | + |
| Gene length (bp) | 1623 |
| Transcript length (bp) | 1557 |
| Coding sequence length (bp) | 1557 |
| Protein length (aa) | 519 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00849 | PseudoU_synth_2 | RNA pseudouridylate synthase | 3.8E-26 | 133 | 308 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009451 | RNA modification | Yes |
| GO:0001522 | pseudouridine synthesis | Yes |
| GO:0009982 | pseudouridine synthase activity | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0009987 | cellular process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0016853 | isomerase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0043412 | macromolecule modification | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0016866 | intramolecular transferase activity | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g9962.t1 MSLVPVDTTLQVPPPDPVQKPPEVAITPCDPWPAPYYFEGGLRRVKPYHYTYNTFCKERWRGRELVDIFLSEFRD RPAEYYRKALQDGLVAVNGTPAGPNTVVKNGQIISHTLHRHEPPVTGKEIGIIHEDDDLIVIDKPAGVPVHSAGR YHYNSVLEIMRSQRHPEWVPRPCNRLDRLTSGVMFLGKTAKAAENMTGKLKARTLQKEYVARVKGKFPDGVIVCD QPIMSVSPKVGLNRVRATGKEAKTKFRRLAYIPPQAPEPQSASDAEGRVATPPPIYTNEDEGYSIVHCLPLTGRT HQIRVHLQFLGHPISNDPIYSNRKVFGPDLGKNETSDERDNELIDKLCNIGKTEVPDTVSYRTHLTTVPLVPPGT DNSVVEEIMSREHEAAVERYHKRKGEMLSGERCKICDTELYSDPRPEDLGIFLHAAAYSDKEDGWKYTSKMPTWA LPPDGVEGPREMPDWVFVPEEEEIVIGHAVLPGAEDGSESNIPALVQGVGLVDISSGRKADAAAQATA* |
| Coding | >Ani_SJS100_1|g9962.t1 ATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTCCTGATCCGGTTCAGAAGCCCCCTGAGGTGGCC ATCACGCCCTGTGACCCATGGCCTGCACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTACCACTAC ACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAATTGGTGGACATTTTCCTGTCGGAGTTTCGCGAC CGTCCCGCAGAGTACTACAGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGCCTGCTGGCCCCAAT ACCGTCGTCAAGAACGGCCAGATCATCTCGCATACCCTGCACCGTCACGAACCCCCCGTCACCGGGAAAGAGATT GGTATCATCCACGAGGATGACGATCTGATTGTCATTGATAAGCCTGCCGGTGTGCCCGTCCACTCCGCTGGTCGC TACCACTACAACTCCGTGCTCGAGATCATGCGCTCTCAACGCCATCCGGAATGGGTCCCACGACCTTGCAACCGT TTGGACCGACTCACCTCCGGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACATGACCGGAAAGCTC AAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGCGTCAAGGGAAAATTCCCTGACGGTGTCATCGTCTGCGAT CAGCCCATCATGTCCGTGAGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGGAGGCAAAGACCAAG TTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCGGAGCCTCAGAGCGCTTCCGACGCAGAGGGACGGGTGGCG ACCCCACCCCCGATCTACACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCCATTGACTGGCCGCACG CATCAGATCCGCGTGCATCTCCAGTTCCTCGGACACCCGATCTCGAACGATCCCATCTACTCCAATCGCAAAGTC TTCGGACCCGATCTCGGAAAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGATAAGCTATGTAATATT GGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGGACACACCTTACCACAGTGCCTCTGGTACCGCCAGGCACG GACAACTCTGTTGTGGAGGAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACCACAAGCGCAAAGGC GAGATGTTATCTGGCGAGAGATGCAAGATCTGCGACACAGAGCTCTACTCGGACCCTAGACCTGAGGATCTAGGC ATCTTCCTCCACGCCGCGGCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAAGATGCCTACCTGGGCT CTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATGCCCGACTGGGTGTTTGTTCCCGAGGAAGAGGAGATTGTT ATCGGACATGCTGTCTTGCCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTGTGCAGGGTGTCGGC CTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCCGCTGCGCAGGCGACTGCTTGA |
| Transcript | >Ani_SJS100_1|g9962.t1 ATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTCCTGATCCGGTTCAGAAGCCCCCTGAGGTGGCC ATCACGCCCTGTGACCCATGGCCTGCACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTACCACTAC ACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAATTGGTGGACATTTTCCTGTCGGAGTTTCGCGAC CGTCCCGCAGAGTACTACAGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGCCTGCTGGCCCCAAT ACCGTCGTCAAGAACGGCCAGATCATCTCGCATACCCTGCACCGTCACGAACCCCCCGTCACCGGGAAAGAGATT GGTATCATCCACGAGGATGACGATCTGATTGTCATTGATAAGCCTGCCGGTGTGCCCGTCCACTCCGCTGGTCGC TACCACTACAACTCCGTGCTCGAGATCATGCGCTCTCAACGCCATCCGGAATGGGTCCCACGACCTTGCAACCGT TTGGACCGACTCACCTCCGGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACATGACCGGAAAGCTC AAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGCGTCAAGGGAAAATTCCCTGACGGTGTCATCGTCTGCGAT CAGCCCATCATGTCCGTGAGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGGAGGCAAAGACCAAG TTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCGGAGCCTCAGAGCGCTTCCGACGCAGAGGGACGGGTGGCG ACCCCACCCCCGATCTACACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCCATTGACTGGCCGCACG CATCAGATCCGCGTGCATCTCCAGTTCCTCGGACACCCGATCTCGAACGATCCCATCTACTCCAATCGCAAAGTC TTCGGACCCGATCTCGGAAAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGATAAGCTATGTAATATT GGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGGACACACCTTACCACAGTGCCTCTGGTACCGCCAGGCACG GACAACTCTGTTGTGGAGGAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACCACAAGCGCAAAGGC GAGATGTTATCTGGCGAGAGATGCAAGATCTGCGACACAGAGCTCTACTCGGACCCTAGACCTGAGGATCTAGGC ATCTTCCTCCACGCCGCGGCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAAGATGCCTACCTGGGCT CTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATGCCCGACTGGGTGTTTGTTCCCGAGGAAGAGGAGATTGTT ATCGGACATGCTGTCTTGCCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTGTGCAGGGTGTCGGC CTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCCGCTGCGCAGGCGACTGCTTGA |
| Gene | >Ani_SJS100_1|g9962.t1 ATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTCCTGATCCGGTTCAGAAGCCCCCTGAGGTGGCC ATCACGCCCTGTGACCCATGGCCTGCACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTACCACTAC ACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAATTGGTGGACATTTTCCTGTCGGAGTTTCGCGAC CGTCCCGCAGAGTACTACGTACGTTCTCATCTCTTGGCTATTCTTTAAAGAATCATATACTGACATAGTTGTTCT GGACCGCAGAGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGCCTGCTGGCCCCAATACCGTCGTC AAGAACGGCCAGATCATCTCGCATACCCTGCACCGTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATC CACGAGGATGACGATCTGATTGTCATTGATAAGCCTGCCGGTGTGCCCGTCCACTCCGCTGGTCGCTACCACTAC AACTCCGTGCTCGAGATCATGCGCTCTCAACGCCATCCGGAATGGGTCCCACGACCTTGCAACCGTTTGGACCGA CTCACCTCCGGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACATGACCGGAAAGCTCAAGGCCCGC ACCCTCCAGAAGGAGTATGTGGCGCGCGTCAAGGGAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATC ATGTCCGTGAGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGGAGGCAAAGACCAAGTTCCGTCGC CTGGCGTATATCCCGCCTCAAGCTCCGGAGCCTCAGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCC CCGATCTACACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCCATTGACTGGCCGCACGCATCAGATC CGCGTGCATCTCCAGTTCCTCGGACACCCGATCTCGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCC GATCTCGGAAAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGATAAGCTATGTAATATTGGCAAGACT GAAGTCCCCGACACCGTAAGCTATCGGACACACCTTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCT GTTGTGGAGGAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACCACAAGCGCAAAGGCGAGATGTTA TCTGGCGAGAGATGCAAGATCTGCGACACAGAGCTCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTC CACGCCGCGGCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAAGATGCCTACCTGGGCTCTGCCGCCT GATGGCGTGGAGGGACCGCGCGAGATGCCCGACTGGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACAT GCTGTCTTGCCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTGTGCAGGGTGTCGGCCTAGTCGAC ATTTCGTCTGGTAGGAAGGCAGATGCCGCTGCGCAGGCGACTGCTTGA |