© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g9940.t1 |
| Gene name | |
| Location | scaffold_100:55092..56072 |
| Strand | - |
| Gene length (bp) | 980 |
| Transcript length (bp) | 867 |
| Coding sequence length (bp) | 867 |
| Protein length (aa) | 289 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01184 | Gpr1_Fun34_YaaH | GPR1/FUN34/yaaH family | 1.1E-89 | 57 | 273 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 56 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 74 | 96 | 22 |
| 2 | 101 | 123 | 22 |
| 3 | 130 | 152 | 22 |
| 4 | 172 | 194 | 22 |
| 5 | 199 | 221 | 22 |
| 6 | 231 | 253 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g9940.t1 MSAEHPIEKDMAPENGSNGSAPLTHELTAEETARAAARFGYGPMAHVNTKEANLRPFGGEFQPGLYKSVEQRKFA NPAPLGLCAFALTTFLLSLINMGTRGISANNIVVGLAFGYGGLVQLLAGMWEMAVGNTFGATALSSYGGFWISFA IVLTPGGFEIESSIESAGGATMFYNSMGLYLLGWFIFTTILLFCTLRSTVAFFCLFLFLDLTFLLLGVGYLQRNS AGEPNTPVIKAGGFFGLLAAFAAWYNALAGIADSSNSFFIIPVAHFPWSPTARSRAKTPRETV* |
| Coding | >Ani_SJS100_1|g9940.t1 ATGTCTGCTGAACACCCTATTGAGAAGGATATGGCTCCTGAGAACGGCAGCAATGGCAGTGCTCCCTTGACCCAC GAGTTGACCGCTGAGGAAACCGCCAGAGCTGCTGCGCGTTTCGGCTACGGACCCATGGCTCACGTCAACACCAAG GAGGCCAACCTGCGCCCCTTCGGAGGTGAATTCCAGCCTGGTCTGTACAAGTCGGTCGAGCAGCGCAAGTTCGCC AACCCGGCGCCTCTGGGTCTCTGCGCTTTCGCCCTCACCACTTTCCTCCTGAGTTTGATCAACATGGGAACCCGT GGTATCTCTGCGAACAACATTGTCGTTGGTCTGGCTTTCGGATATGGTGGTCTCGTTCAGTTGCTTGCTGGCATG TGGGAAATGGCTGTCGGAAACACCTTCGGTGCCACTGCTCTGTCCTCCTACGGAGGTTTCTGGATCTCTTTCGCC ATTGTCTTGACCCCCGGTGGGTTCGAGATCGAGTCGTCGATTGAATCCGCCGGTGGCGCCACCATGTTCTACAAC TCGATGGGACTGTACCTGCTGGGCTGGTTCATCTTCACCACTATCCTGCTGTTCTGCACCTTGAGGTCCACTGTC GCCTTCTTCTGCCTCTTCCTGTTCCTGGACCTGACCTTTTTGCTGCTTGGTGTTGGTTACCTGCAGCGGAACTCT GCTGGCGAGCCCAACACTCCCGTCATCAAGGCGGGTGGTTTCTTCGGTCTCCTGGCTGCATTCGCCGCTTGGTAC AACGCCCTGGCTGGTATTGCCGACAGCAGCAACAGCTTCTTCATCATCCCTGTTGCTCACTTCCCCTGGTCTCCC ACTGCCCGTAGCCGTGCTAAGACCCCTCGTGAGACCGTCTAA |
| Transcript | >Ani_SJS100_1|g9940.t1 ATGTCTGCTGAACACCCTATTGAGAAGGATATGGCTCCTGAGAACGGCAGCAATGGCAGTGCTCCCTTGACCCAC GAGTTGACCGCTGAGGAAACCGCCAGAGCTGCTGCGCGTTTCGGCTACGGACCCATGGCTCACGTCAACACCAAG GAGGCCAACCTGCGCCCCTTCGGAGGTGAATTCCAGCCTGGTCTGTACAAGTCGGTCGAGCAGCGCAAGTTCGCC AACCCGGCGCCTCTGGGTCTCTGCGCTTTCGCCCTCACCACTTTCCTCCTGAGTTTGATCAACATGGGAACCCGT GGTATCTCTGCGAACAACATTGTCGTTGGTCTGGCTTTCGGATATGGTGGTCTCGTTCAGTTGCTTGCTGGCATG TGGGAAATGGCTGTCGGAAACACCTTCGGTGCCACTGCTCTGTCCTCCTACGGAGGTTTCTGGATCTCTTTCGCC ATTGTCTTGACCCCCGGTGGGTTCGAGATCGAGTCGTCGATTGAATCCGCCGGTGGCGCCACCATGTTCTACAAC TCGATGGGACTGTACCTGCTGGGCTGGTTCATCTTCACCACTATCCTGCTGTTCTGCACCTTGAGGTCCACTGTC GCCTTCTTCTGCCTCTTCCTGTTCCTGGACCTGACCTTTTTGCTGCTTGGTGTTGGTTACCTGCAGCGGAACTCT GCTGGCGAGCCCAACACTCCCGTCATCAAGGCGGGTGGTTTCTTCGGTCTCCTGGCTGCATTCGCCGCTTGGTAC AACGCCCTGGCTGGTATTGCCGACAGCAGCAACAGCTTCTTCATCATCCCTGTTGCTCACTTCCCCTGGTCTCCC ACTGCCCGTAGCCGTGCTAAGACCCCTCGTGAGACCGTCTAA |
| Gene | >Ani_SJS100_1|g9940.t1 ATGTCTGCTGAACACCCTATTGAGAAGGATATGGCTCCTGAGAACGGCAGCAATGGCAGTGCTCCCTTGACCCAC GAGTTGACCGCTGAGGAAACCGCCAGAGCTGCTGCGCGTTTCGGCTACGGACCCATGGCTCACGTCAACACCAAG GAGGCCAACCTGCGCCCCTTCGGAGGTGAATTCCAGCCTGGTCTGTACAAGTCGGTCGAGCAGCGCAAGTTCGCC AACCCGGCGCCTCTGGGTCTCTGCGCTTTCGCCCTCACCACTTTCCTCCTGAGTTTGATCAACATGGGAACCCGT GGTATCTCTGCGAACAACATTGTCGTTGGTCTGGCTTTCGGATATGGTGGTCTCGTTCAGTTGCTTGCTGGCATG TGGTAGGTACACCCCGTTACCACAACTCCCAAGATGAATTATGCTGATCGTTATTGATAGGGAAATGGCTGTCGG AAACACCTTCGGTGCCACTGCTCTGTCCTCCTACGGAGGTTTCTGGATCTCTTTCGCCATTGTCTTGACCCCCGG TGGGTTCGAGATCGAGTCGTCGATTGAATCCGCCGGTGGCGCCACCATGTTCTACAACTCGATGGGACTGTACCT GCTGGTAAGTTTTGAGCAATGGCTGGGAGAGTGAGCATCGCGCTAACTGTCCTCCTTAGGGCTGGTTCATCTTCA CCACTATCCTGCTGTTCTGCACCTTGAGGTCCACTGTCGCCTTCTTCTGCCTCTTCCTGTTCCTGGACCTGACCT TTTTGCTGCTTGGTGTTGGTTACCTGCAGCGGAACTCTGCTGGCGAGCCCAACACTCCCGTCATCAAGGCGGGTG GTTTCTTCGGTCTCCTGGCTGCATTCGCCGCTTGGTACAACGCCCTGGCTGGTATTGCCGACAGCAGCAACAGCT TCTTCATCATCCCTGTTGCTCACTTCCCCTGGTCTCCCACTGCCCGTAGCCGTGCTAAGACCCCTCGTGAGACCG TCTAA |