© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g992.t1 |
| Gene name | |
| Location | scaffold_003:533468..534853 |
| Strand | - |
| Gene length (bp) | 1385 |
| Transcript length (bp) | 1200 |
| Coding sequence length (bp) | 1200 |
| Protein length (aa) | 400 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01062 | Bestrophin | Bestrophin, RFP-TM, chloride channel | 1.9E-70 | 38 | 335 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005254 | chloride channel activity | Yes |
| GO:0005216 | ion channel activity | No |
| GO:0008509 | anion transmembrane transporter activity | No |
| GO:0015267 | channel activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0005253 | anion channel activity | No |
| GO:0015108 | chloride transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015103 | inorganic anion transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 54 | 76 | 22 |
| 2 | 86 | 105 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g992.t1 MRLNFSQPPTPALSRQNTTFLNNAHHYRAGTHPHLLTSRSKPRRWPLVFRFIKGAIHAAILLPVFLHAAFTAFVV YLDVYVFDTVGLPSSIIPSLSIVVGLMLVFRNQTSYNRFWDGRNGMNTIYTCIRNLVRTIVTNGYSTAGPPTAAE KEDIERTIRILMSIPFAVKNHLRAEWGAAWALGNDVAENGVAAFNPDYASLLPAGLVGHEDEGLGLPFQLTFFVD GFIKRGVERGWFNAPGASQMQAQLNSLMDAYGKMETIKLTPIPVAHLIHQKQVLALFGCVLPFGMVDDMGWWTVP MVSLVIFTLYGIEGIGSQLEDPFGYDRNDIKMDAIVGDAKTEIDVVLAEWRRLMASLESATDNGDQHLGNGLVVE EEVKEPKFMPPDMFLKHRARPSGR* |
| Coding | >Ani_SJS100_1|g992.t1 ATGCGATTGAATTTCAGTCAACCCCCGACACCGGCGTTGAGTCGGCAGAACACCACCTTCCTCAACAATGCGCAT CACTATCGCGCAGGGACGCATCCGCATCTCCTGACGAGTCGCAGCAAGCCTCGAAGATGGCCTTTGGTGTTCCGA TTCATTAAAGGCGCTATCCATGCGGCCATTCTGCTGCCCGTCTTCCTGCACGCCGCGTTCACAGCCTTTGTGGTC TATCTCGATGTCTATGTATTTGATACGGTTGGACTACCGAGCAGTATTATCCCATCCTTATCTATAGTCGTGGGT TTGATGCTCGTTTTCCGCAACCAGACCTCCTACAACCGATTCTGGGATGGGCGGAATGGAATGAACACGATCTAT ACGTGCATTCGAAATTTAGTCAGGACTATCGTCACCAATGGCTACAGCACCGCGGGTCCTCCCACTGCCGCAGAG AAAGAGGACATCGAGAGGACGATACGTATCCTCATGTCAATTCCCTTTGCAGTCAAGAATCATCTTCGCGCTGAA TGGGGAGCAGCCTGGGCTCTCGGAAATGATGTAGCTGAGAACGGTGTCGCAGCTTTCAACCCCGATTATGCAAGT CTCCTTCCAGCTGGACTGGTGGGCCACGAAGATGAGGGGCTGGGATTACCGTTTCAACTAACCTTCTTTGTGGAT GGATTTATCAAGAGGGGAGTGGAGCGCGGCTGGTTCAATGCTCCTGGGGCAAGTCAAATGCAGGCTCAGTTGAAC TCTTTGATGGATGCCTATGGAAAAATGGAGACCATCAAGCTGACCCCTATTCCGGTTGCGCATTTGATTCACCAA AAGCAAGTTCTTGCTCTCTTTGGCTGCGTCTTACCCTTCGGTATGGTCGACGATATGGGGTGGTGGACCGTTCCC ATGGTCAGCCTGGTCATCTTCACCTTGTATGGCATCGAAGGCATCGGCTCGCAATTGGAAGACCCCTTCGGGTAC GACCGCAATGACATCAAGATGGATGCCATTGTCGGCGACGCTAAGACTGAAATTGACGTTGTACTGGCTGAATGG CGCAGACTGATGGCGTCGCTCGAGTCAGCGACCGATAATGGCGATCAGCATCTCGGCAACGGTCTGGTTGTGGAG GAGGAGGTTAAGGAGCCGAAATTCATGCCGCCTGATATGTTCCTCAAGCATCGTGCGAGACCATCAGGGCGATAA |
| Transcript | >Ani_SJS100_1|g992.t1 ATGCGATTGAATTTCAGTCAACCCCCGACACCGGCGTTGAGTCGGCAGAACACCACCTTCCTCAACAATGCGCAT CACTATCGCGCAGGGACGCATCCGCATCTCCTGACGAGTCGCAGCAAGCCTCGAAGATGGCCTTTGGTGTTCCGA TTCATTAAAGGCGCTATCCATGCGGCCATTCTGCTGCCCGTCTTCCTGCACGCCGCGTTCACAGCCTTTGTGGTC TATCTCGATGTCTATGTATTTGATACGGTTGGACTACCGAGCAGTATTATCCCATCCTTATCTATAGTCGTGGGT TTGATGCTCGTTTTCCGCAACCAGACCTCCTACAACCGATTCTGGGATGGGCGGAATGGAATGAACACGATCTAT ACGTGCATTCGAAATTTAGTCAGGACTATCGTCACCAATGGCTACAGCACCGCGGGTCCTCCCACTGCCGCAGAG AAAGAGGACATCGAGAGGACGATACGTATCCTCATGTCAATTCCCTTTGCAGTCAAGAATCATCTTCGCGCTGAA TGGGGAGCAGCCTGGGCTCTCGGAAATGATGTAGCTGAGAACGGTGTCGCAGCTTTCAACCCCGATTATGCAAGT CTCCTTCCAGCTGGACTGGTGGGCCACGAAGATGAGGGGCTGGGATTACCGTTTCAACTAACCTTCTTTGTGGAT GGATTTATCAAGAGGGGAGTGGAGCGCGGCTGGTTCAATGCTCCTGGGGCAAGTCAAATGCAGGCTCAGTTGAAC TCTTTGATGGATGCCTATGGAAAAATGGAGACCATCAAGCTGACCCCTATTCCGGTTGCGCATTTGATTCACCAA AAGCAAGTTCTTGCTCTCTTTGGCTGCGTCTTACCCTTCGGTATGGTCGACGATATGGGGTGGTGGACCGTTCCC ATGGTCAGCCTGGTCATCTTCACCTTGTATGGCATCGAAGGCATCGGCTCGCAATTGGAAGACCCCTTCGGGTAC GACCGCAATGACATCAAGATGGATGCCATTGTCGGCGACGCTAAGACTGAAATTGACGTTGTACTGGCTGAATGG CGCAGACTGATGGCGTCGCTCGAGTCAGCGACCGATAATGGCGATCAGCATCTCGGCAACGGTCTGGTTGTGGAG GAGGAGGTTAAGGAGCCGAAATTCATGCCGCCTGATATGTTCCTCAAGCATCGTGCGAGACCATCAGGGCGATAA |
| Gene | >Ani_SJS100_1|g992.t1 ATGCGATTGAATTTCAGTCAACCCCCGACACCGGCGTTGAGTCGGCAGAACACCACCTTCCTCAACAATGCGCAT CACTATCGCGCAGGGACGCATCCGCATCTCCTGACGAGTCGCAGCAAGCCTCGAAGGTAAACCGATATCATCACT CATCAAATTACACCCTACTATAGCACCATGCTAAATACGCGCCATGTTAGATGGCCTTTGGTGTTCCGATTCATT AAAGGCGCTATCCATGCGGCCATTCTGCTGCCCGTCTTCCTGCACGCCGCGTTCACAGCCTTTGTGGTCTATCTC GATGTCTATGTATTTGATACGGTTGGACTACCGAGCAGTATTGTAGGTCTCGCTCACATGGCATGCCGTTGTGCT TCCCAATCTGATTATGCAACCGTAGATCCCATCCTTATCTATAGTCGTGGGTTTGATGCTCGTTTTCCGCAACCA GACCTCCTACAACCGATTCTGGGATGGGCGGAATGGAATGAACACGATCTATACGTGCATTCGAAATTTAGTCAG GACTATCGTCACCAATGGCTACAGCACCGCGGGTCCTCCCACTGCCGCAGAGAAAGAGGACATCGAGAGGACGAT ACGTATCCTCATGTCAATTCCCTTTGCAGTCAAGAATCATCTTCGCGCTGAATGGGGAGCAGCCTGGGCTCTCGG AAATGATGTAGCTGAGAACGGTGTCGCAGCTTTCAACCCCGATTATGCAAGTCTCCTTCCAGCTGGACTGGTGGG CCACGAAGATGAGGGGCTGGGATTACCGTTTCAACTAACCTTCTTTGTGGATGGATTTATCAAGAGGGGAGTGGA GCGCGGCTGGTTCAATGCTCCTGGGGCAAGTCAAATGCAGGCTCAGTTGAACTCTTTGATGGATGCCTATGGAAA AATGGAGACCATCAAGCTGACCCCTATTCCGGTTGCGCATTTGTAAGTTCCTTGTCTTGAAACGCCCCTTTGACT ATCCACGCCAGCTCACATGCGAAAGGATTCACCAAAAGCAAGTTCTTGCTCTCTTTGGCTGCGTCTTACCCTTCG GTATGGTCGACGATATGGGGTGGTGGACCGTTCCCATGGTCAGCCTGGTCATCTTCACCTTGTATGGCATCGAAG GCATCGGCTCGCAATTGGAAGACCCCTTCGGGTACGACCGCAATGACATCAAGATGGATGCCATTGTCGGCGACG CTAAGACTGAAATTGACGTTGTACTGGCTGAATGGCGCAGACTGATGGCGTCGCTCGAGTCAGCGACCGATAATG GCGATCAGCATCTCGGCAACGGTCTGGTTGTGGAGGAGGAGGTTAAGGAGCCGAAATTCATGCCGCCTGATATGT TCCTCAAGCATCGTGCGAGACCATCAGGGCGATAA |