© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g9871.t1 |
| Gene name | |
| Location | scaffold_098:91011..92344 |
| Strand | + |
| Gene length (bp) | 1333 |
| Transcript length (bp) | 1167 |
| Coding sequence length (bp) | 1167 |
| Protein length (aa) | 389 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 2.5E-18 | 54 | 209 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 1.2E-21 | 237 | 378 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 55 | 74 | 19 |
| 3 | 84 | 106 | 22 |
| 4 | 118 | 140 | 22 |
| 5 | 150 | 172 | 22 |
| 6 | 185 | 207 | 22 |
| 7 | 264 | 286 | 22 |
| 8 | 299 | 321 | 22 |
| 9 | 336 | 353 | 17 |
| 10 | 360 | 379 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g9871.t1 MAFFKNAQETGSPSLLASVWHTVEVTFLSSYTNVLLIFVFLGILSGSQEWNPSAVFVLNFLAIFPLASLLSFATE ELAKSVGQTVGGLINASFGNAIEMIVGITAVSQGEIHMVQSSMVGSILSGTLLVLGCCFFASGYDKETVHFNVDV TGIMSSLMIVSSSALIIPSTLYSTALYAAPGGNEYILHLSHITAAFLLLFYFVYLYFQLSSHSHLFSSTEDEEEE EERQLGPLAASLILIAATLGVTVCSDYLVEGVDGFVEAYGVSRAFLGLIVVPIVGNAGEFATTVKAAKEGKVDLA IGVIVGSTLQIALFVTPFLVLYGWALGQPMSLRFNSFETACFSLAVVVMNCLIREGRSNYFAGVLLCGTYLIIAI AFYVHPDIVVPGE* |
| Coding | >Ani_SJS100_1|g9871.t1 ATGGCCTTCTTTAAAAATGCCCAGGAGACGGGCTCACCTTCTCTTCTCGCCAGCGTCTGGCATACTGTTGAGGTG ACGTTTCTGTCCAGCTACACCAATGTGCTCTTAATATTTGTATTTCTGGGGATACTGTCCGGCTCCCAAGAATGG AATCCCTCCGCCGTGTTTGTCCTGAATTTCCTGGCCATCTTCCCGCTGGCCTCGTTGTTGTCCTTTGCGACCGAG GAATTGGCTAAAAGCGTCGGCCAGACGGTGGGAGGTTTGATCAATGCGTCTTTTGGCAATGCCATCGAAATGATC GTTGGAATCACAGCCGTGAGCCAAGGAGAGATTCATATGGTCCAATCTTCGATGGTTGGCTCAATCCTGTCTGGC ACTCTGCTGGTTCTGGGCTGCTGCTTCTTCGCCAGCGGCTATGATAAAGAGACAGTTCACTTCAATGTGGATGTG ACGGGGATCATGTCGTCTTTGATGATAGTGTCATCCTCCGCGCTCATTATCCCGTCAACCTTGTACTCCACGGCC CTCTACGCTGCTCCTGGTGGGAACGAGTATATCCTCCACCTGTCGCATATTACTGCTGCCTTCTTACTGCTCTTT TATTTTGTCTATCTTTACTTCCAACTCAGCAGCCACTCTCACCTCTTCAGTAGCACCGAGGACGAGGAAGAAGAG GAGGAGCGCCAGCTAGGACCCCTCGCAGCTAGTCTTATCCTGATTGCCGCTACGCTGGGAGTGACTGTCTGTTCC GACTACCTGGTAGAAGGGGTAGACGGTTTCGTTGAAGCTTATGGGGTAAGCAGGGCATTCTTGGGCCTGATTGTT GTGCCGATTGTGGGCAACGCCGGTGAGTTTGCAACTACCGTCAAAGCAGCAAAGGAAGGGAAGGTGGATCTGGCC ATTGGCGTGATTGTGGGCAGCACGCTTCAAATTGCATTATTCGTCACGCCGTTCTTGGTCTTGTATGGATGGGCT CTGGGTCAACCGATGTCCTTGCGCTTCAACTCGTTTGAAACCGCCTGTTTCTCGCTGGCGGTGGTGGTGATGAAT TGCCTGATTCGGGAGGGTCGGTCGAATTATTTTGCAGGTGTCTTGTTATGTGGAACGTACTTGATTATTGCGATC GCCTTCTATGTCCACCCAGACATCGTCGTTCCTGGAGAGTAA |
| Transcript | >Ani_SJS100_1|g9871.t1 ATGGCCTTCTTTAAAAATGCCCAGGAGACGGGCTCACCTTCTCTTCTCGCCAGCGTCTGGCATACTGTTGAGGTG ACGTTTCTGTCCAGCTACACCAATGTGCTCTTAATATTTGTATTTCTGGGGATACTGTCCGGCTCCCAAGAATGG AATCCCTCCGCCGTGTTTGTCCTGAATTTCCTGGCCATCTTCCCGCTGGCCTCGTTGTTGTCCTTTGCGACCGAG GAATTGGCTAAAAGCGTCGGCCAGACGGTGGGAGGTTTGATCAATGCGTCTTTTGGCAATGCCATCGAAATGATC GTTGGAATCACAGCCGTGAGCCAAGGAGAGATTCATATGGTCCAATCTTCGATGGTTGGCTCAATCCTGTCTGGC ACTCTGCTGGTTCTGGGCTGCTGCTTCTTCGCCAGCGGCTATGATAAAGAGACAGTTCACTTCAATGTGGATGTG ACGGGGATCATGTCGTCTTTGATGATAGTGTCATCCTCCGCGCTCATTATCCCGTCAACCTTGTACTCCACGGCC CTCTACGCTGCTCCTGGTGGGAACGAGTATATCCTCCACCTGTCGCATATTACTGCTGCCTTCTTACTGCTCTTT TATTTTGTCTATCTTTACTTCCAACTCAGCAGCCACTCTCACCTCTTCAGTAGCACCGAGGACGAGGAAGAAGAG GAGGAGCGCCAGCTAGGACCCCTCGCAGCTAGTCTTATCCTGATTGCCGCTACGCTGGGAGTGACTGTCTGTTCC GACTACCTGGTAGAAGGGGTAGACGGTTTCGTTGAAGCTTATGGGGTAAGCAGGGCATTCTTGGGCCTGATTGTT GTGCCGATTGTGGGCAACGCCGGTGAGTTTGCAACTACCGTCAAAGCAGCAAAGGAAGGGAAGGTGGATCTGGCC ATTGGCGTGATTGTGGGCAGCACGCTTCAAATTGCATTATTCGTCACGCCGTTCTTGGTCTTGTATGGATGGGCT CTGGGTCAACCGATGTCCTTGCGCTTCAACTCGTTTGAAACCGCCTGTTTCTCGCTGGCGGTGGTGGTGATGAAT TGCCTGATTCGGGAGGGTCGGTCGAATTATTTTGCAGGTGTCTTGTTATGTGGAACGTACTTGATTATTGCGATC GCCTTCTATGTCCACCCAGACATCGTCGTTCCTGGAGAGTAA |
| Gene | >Ani_SJS100_1|g9871.t1 ATGGCCTTCTTTAAAAATGCCCAGGAGACGGGCTCACCTTCTCTTCTCGCCAGCGTCTGGCATACTGTTGAGGTG ACGTTTCTGTCCAGCTACACCAATGTGCTCTTAATATTTGTATTTCTGGGGATACTGTCCGGCTCCCAAGAATGG AATCCCTCCGCCGTGTTTGTCCTGAATTTCCTGGCCATCTTCCCGCTGGCCTCGTTGTTGTCCTTTGCGACCGAG GAATTGGCTAAAAGCGTCGGCCAGACGGTGGGAGGTTTGATCAATGCGTCTTTTGGCAATGCCATCGAAATGATC GTAAGATAGATTCCTAATTCATCGTTTGTGGTTCATGCTAAATATAGTATTTAGGTTGGAATCACAGCCGTGAGC CAAGGAGAGATTCATATGGTCCAATCTTCGATGGTTGGCTCAATCCTGTCTGGCACTCTGCTGGTATGCCATGCA TCACCCTATCCTCCTGCAGCGGTTTCTGACTATCATCATCCAGGTTCTGGGCTGCTGCTTCTTCGCCAGCGGCTA TGATAAAGAGACAGTTCACTTCAATGTGGATGTGACGGGGATCATGTCGTCTTTGATGATAGTGTCATCCTCCGC GCTCATTATCCCGTCAACCTTGTACTCCACGGCCCTCTACGCTGCTCCTGGTGGGAACGAGTATATCCTCCACCT GTCGCATATTACTGCTGCCTTCTTACTGCTCTTTTATTTTGTCTATCTTTACTTCCAACTCAGCAGCCACTCTCA CCTCTTCAGTAGCACCGAGGACGAGGAAGAAGAGGAGGAGCGCCAGCTAGGACCCCTCGCAGCTAGTCTTATCCT GATTGCCGCTACGCTGGGAGTGACTGTCTGTTCCGACTACCTGGTAGAAGGGGTAGACGGTTTCGTTGAAGCTTA TGGGGTAAGCAGGGCATTCTTGGGCCTGATTGTTGTGCCGATTGTGGGCAACGCCGGTGAGTTTGCAACTACCGT CAAAGCAGCAAAGGAAGGGAAGGTGGATCTGGCCATTGGCGTGATTGTGGGCAGCACGCTTCAAATTGCATTATT CGTCACGCCGTTCTTGGTCTTGTATGGATGGGCTCTGGGTCAACCGATGTCCTTGCGCTTCAACTCGTTTGAAAC CGCCTGTTTCTCGCTGGCGGTGGTGGTGATGAATTGCCTGATTCGGGAGGGTCGGTCGAATTATTTTGCAGGTGT CTTGTTATGTGGAACGTGAGTCTCCCTGTGCTTCTCTTCCCAAGGCAAGTCTGCTGTCTAACCTCTGCTCAGGTA CTTGATTATTGCGATCGCCTTCTATGTCCACCCAGACATCGTCGTTCCTGGAGAGTAA |