© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g9870.t1 |
| Gene name | |
| Location | scaffold_098:88965..90406 |
| Strand | - |
| Gene length (bp) | 1441 |
| Transcript length (bp) | 1308 |
| Coding sequence length (bp) | 1308 |
| Protein length (aa) | 436 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 3.2E-09 | 72 | 231 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 4.4E-06 | 281 | 416 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 43 | 65 | 22 |
| 2 | 72 | 94 | 22 |
| 3 | 134 | 156 | 22 |
| 4 | 169 | 191 | 22 |
| 5 | 211 | 229 | 18 |
| 6 | 277 | 296 | 19 |
| 7 | 311 | 333 | 22 |
| 8 | 346 | 368 | 22 |
| 9 | 378 | 395 | 17 |
| 10 | 404 | 426 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g9870.t1 MEGPSGISAESDPPTPPPSERASSPTAPLHGRTNPFHMVIMRIGSHPVLKALAGFVLLGLLSGFLGWPRQLVFWV NLVALVPLMAIITIAITELSHTLGPFFHELLKSTLGNSVELMVGLVSAQMGQGRIFHSVVVGSILCYSLLVLGSC FLISGYDKEHLHFDRTLTSIMSSLMMMVCISLVLPGVMVTFPSLDTLSISAVVTSHEVQMVSYGIALILLGLFGV FLLFQLKSHAALFRIAEGAAESHWNDASSENRADENPMPTVHELVMFTPRSAGVALLVGVACLTGCVVHIVNSVN AALERGTGTSFPILVWVPLVGNVTKYLTIVIISRQGHVEVAVRNILNSVLRLTLLVTPTLVLLGWSLGQSVTLQM DNFEATMLFLAAMVMSHVIHEGRANYFDGLMLCGTYVITGVAFYVCPSVSTIKDVAVVNT* |
| Coding | >Ani_SJS100_1|g9870.t1 ATGGAGGGTCCCTCTGGCATATCGGCAGAATCGGATCCCCCTACGCCGCCTCCCAGTGAGCGCGCATCTTCGCCG ACCGCGCCCCTCCACGGGCGCACCAATCCTTTCCACATGGTCATTATGAGAATCGGTAGCCACCCTGTCTTGAAA GCACTCGCTGGATTTGTGCTCCTGGGACTCCTCTCAGGCTTTCTGGGATGGCCCAGGCAGTTGGTCTTCTGGGTG AATCTGGTCGCCTTAGTTCCGCTGATGGCCATCATCACCATTGCTATCACCGAGCTGTCCCATACGCTGGGCCCG TTCTTTCACGAGCTCCTGAAGTCGACCCTGGGTAACTCGGTCGAATTGATGGTTGGGCTTGTGTCTGCGCAAATG GGTCAAGGGCGTATCTTCCACTCAGTTGTGGTTGGAAGTATCCTGTGTTATTCTCTCCTGGTGCTGGGTAGCTGT TTCTTGATCTCTGGCTACGACAAGGAACATCTACACTTTGATCGCACCTTGACTAGCATCATGTCGTCGTTGATG ATGATGGTATGCATTTCTTTGGTGCTTCCCGGCGTCATGGTCACGTTTCCGTCGTTGGATACCCTCTCCATCAGC GCCGTAGTGACCAGCCATGAGGTTCAGATGGTCTCGTATGGGATTGCTCTCATCTTGCTGGGTCTATTCGGTGTC TTTCTCCTCTTTCAACTCAAGTCCCATGCTGCATTATTTCGCATTGCCGAGGGGGCAGCTGAGTCGCACTGGAAC GATGCTAGCAGTGAAAACCGGGCGGATGAGAACCCAATGCCGACTGTTCATGAACTGGTCATGTTCACGCCCCGA TCGGCGGGAGTTGCTCTCCTGGTTGGCGTGGCGTGCTTGACGGGGTGTGTTGTGCACATTGTGAACAGCGTCAAT GCTGCGCTAGAGCGGGGAACGGGCACCAGCTTCCCCATTCTGGTTTGGGTGCCTCTGGTGGGGAACGTGACCAAG TACCTGACCATCGTGATCATCTCGCGCCAGGGCCATGTGGAGGTCGCCGTCCGAAACATCTTGAATAGCGTTCTG CGCCTCACCCTGTTGGTCACGCCAACTCTGGTTCTCTTGGGGTGGTCGCTGGGCCAATCGGTGACTCTGCAGATG GATAATTTCGAAGCGACGATGTTGTTCCTCGCCGCTATGGTTATGAGCCACGTGATTCACGAAGGTCGGGCCAAC TACTTTGATGGCCTCATGCTGTGCGGAACGTACGTCATTACTGGAGTGGCCTTTTATGTGTGTCCCAGTGTGAGC ACCATCAAGGACGTCGCGGTCGTAAACACATGA |
| Transcript | >Ani_SJS100_1|g9870.t1 ATGGAGGGTCCCTCTGGCATATCGGCAGAATCGGATCCCCCTACGCCGCCTCCCAGTGAGCGCGCATCTTCGCCG ACCGCGCCCCTCCACGGGCGCACCAATCCTTTCCACATGGTCATTATGAGAATCGGTAGCCACCCTGTCTTGAAA GCACTCGCTGGATTTGTGCTCCTGGGACTCCTCTCAGGCTTTCTGGGATGGCCCAGGCAGTTGGTCTTCTGGGTG AATCTGGTCGCCTTAGTTCCGCTGATGGCCATCATCACCATTGCTATCACCGAGCTGTCCCATACGCTGGGCCCG TTCTTTCACGAGCTCCTGAAGTCGACCCTGGGTAACTCGGTCGAATTGATGGTTGGGCTTGTGTCTGCGCAAATG GGTCAAGGGCGTATCTTCCACTCAGTTGTGGTTGGAAGTATCCTGTGTTATTCTCTCCTGGTGCTGGGTAGCTGT TTCTTGATCTCTGGCTACGACAAGGAACATCTACACTTTGATCGCACCTTGACTAGCATCATGTCGTCGTTGATG ATGATGGTATGCATTTCTTTGGTGCTTCCCGGCGTCATGGTCACGTTTCCGTCGTTGGATACCCTCTCCATCAGC GCCGTAGTGACCAGCCATGAGGTTCAGATGGTCTCGTATGGGATTGCTCTCATCTTGCTGGGTCTATTCGGTGTC TTTCTCCTCTTTCAACTCAAGTCCCATGCTGCATTATTTCGCATTGCCGAGGGGGCAGCTGAGTCGCACTGGAAC GATGCTAGCAGTGAAAACCGGGCGGATGAGAACCCAATGCCGACTGTTCATGAACTGGTCATGTTCACGCCCCGA TCGGCGGGAGTTGCTCTCCTGGTTGGCGTGGCGTGCTTGACGGGGTGTGTTGTGCACATTGTGAACAGCGTCAAT GCTGCGCTAGAGCGGGGAACGGGCACCAGCTTCCCCATTCTGGTTTGGGTGCCTCTGGTGGGGAACGTGACCAAG TACCTGACCATCGTGATCATCTCGCGCCAGGGCCATGTGGAGGTCGCCGTCCGAAACATCTTGAATAGCGTTCTG CGCCTCACCCTGTTGGTCACGCCAACTCTGGTTCTCTTGGGGTGGTCGCTGGGCCAATCGGTGACTCTGCAGATG GATAATTTCGAAGCGACGATGTTGTTCCTCGCCGCTATGGTTATGAGCCACGTGATTCACGAAGGTCGGGCCAAC TACTTTGATGGCCTCATGCTGTGCGGAACGTACGTCATTACTGGAGTGGCCTTTTATGTGTGTCCCAGTGTGAGC ACCATCAAGGACGTCGCGGTCGTAAACACATGA |
| Gene | >Ani_SJS100_1|g9870.t1 ATGGAGGGTCCCTCTGGCATATCGGCAGAATCGGATCCCCCTACGCCGCCTCCCAGTGAGCGCGCATCTTCGCCG ACCGCGCCCCTCCACGGGCGCACCAATCCTTTCCACATGGTCATTATGAGAATCGGTAGCCACCCTGTCTTGAAA GCACTCGCTGGATTTGTGCTCCTGGGACTCCTCTCAGGCTTTCTGGGATGGCCCAGGCAGTTGGTCTTCTGGGTG AATCTGGTCGCCTTAGTTCCGCTGATGGCCATCATCACCATTGCTATCACCGAGCTGTCCCATACGCTGGGCCCG TTCTTTCACGAGCTCCTGAAGTCGACCCTGGGTAACTCGGTCGAATTGATGGTTGGGCTTGTGTCTGCGCAAATG GGTCAAGGGCGTATCTTCCACTCAGTTGTGGTTGGAAGTATCCTGTGTTATTCTCTCCTGGTAGGCGATTAGTTT TGTTGTTAGGCCGCTTGGATCACGTTGGTTGACTATTAGAATATAGGTGCTGGGTAGCTGTTTCTTGATCTCTGG CTACGACAAGGAACATCTACACTTTGATCGCACCTTGACTAGCATCATGTCGTCGTTGATGATGATGGTATGCAT TTCTTTGGTGCTTCCCGGCGTCATGGTCACGTTTCCGTCGTTGGATACCCTCTCCATCAGCGCCGTAGTGACCAG CCATGAGGTTCAGATGGTCTCGTATGGGATTGCTCTCATCTTGCTGGGTCTATTCGGTGTCTTTCTCCTCTTTCA ACTCAAGTCCCATGCTGCATTATTTCGCATTGCCGAGGGGGCAGCTGAGTCGCACTGGAACGATGCTAGCAGTGA AAACCGGGCGGATGAGAACCCAATGCCGACTGTTCATGAACTGGTCATGTTCACGCCCCGATCGGCGGGAGTTGC TCTCCTGGTTGGCGTGGCGTGCTTGACGGGGTGTGTTGTGCACATTGTGAACAGCGTCAATGCTGCGCTAGAGCG GGGAACGGGCACCAGCTTCCCCATTCTGGTTTGGGTGCCTCTGGTGGGGAACGTGACCAAGTACCTGACCATCGT GATCATCTCGCGCCAGGGCCATGTGGAGGTCGCCGTCCGAAACATCTTGAATAGCGTTCTGCGCCTCACCCTGTT GGTCACGCCAACTCTGGTTCTCTTGGGGTGGTCGCTGGGCCAATCGGTGACTCTGCAGATGGATAATTTCGAAGC GACGATGTTGTTCCTCGCCGCTATGGTTATGAGCCACGTGATTCACGAAGGTCGGGCCAACTACTTTGATGGCCT CATGCTGTGCGGAACGTGAGTACATCCCAGACTGATAACCATACGTTGGCCCTTGTCAGTTTTACGACACTACTA ACAAAAACATAGGTACGTCATTACTGGAGTGGCCTTTTATGTGTGTCCCAGTGTGAGCACCATCAAGGACGTCGC GGTCGTAAACACATGA |