Protein ID | Ani_SJS100_1|g9786.t1 |
Gene name | |
Location | scaffold_096:8946..10565 |
Strand | - |
Gene length (bp) | 1619 |
Transcript length (bp) | 1359 |
Coding sequence length (bp) | 1359 |
Protein length (aa) | 453 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 1.5E-04 | 252 | 277 |
GO Term | Description | Terminal node |
---|---|---|
GO:0046872 | metal ion binding | Yes |
GO:0043169 | cation binding | No |
GO:0005488 | binding | No |
GO:0043167 | ion binding | No |
GO:0003674 | molecular_function | No |
Orthofinder run ID | 3 |
Orthogroup | 9851 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g9786.t1 MTEDQDLMAKISQLAGQINRHKTQQSQPESPYSSEIAPGHHVSRHVPYRGRGWAPYRGRHYARGRHVAPHRHRTL ILNNATSGTPGSATPAGTGTDTDGEARSATPNEWVVKRDRHMQLINTSIYDKETQARTKAMEESRQAKAQKRAQV EQARVLNYAQGVGRVHPTGFAAPQVSTADPSAEYQVFVNDIPFRVSRGGGKLIRVSDNPNTANATPKRVTVAGVA FVRSKNGNLHRLGAVTSKRKPMTVKKKNALCQRFTTTGSCYKGPTCPYIHDPNKVAMCKDFLQTGQCNAGISCDL SHEPSPHRSPACVHFLRGRCSNPECRYAHVRVTPGAPVCRDFAVLGYCEKGAECDQRHVHECPDYANEGVCNKKR CRLPHVDRAGQIRKNAASKTDAMAQAEESDASSEEEEYDEIDTDDVDSDDLDEDEPQLIAAESDTGEVSQQQDYI RL* |
Coding | >Ani_SJS100_1|g9786.t1 ATGACAGAAGATCAGGATCTGATGGCCAAAATCAGCCAGCTTGCTGGCCAGATTAATAGGCACAAAACCCAACAA TCTCAACCTGAGTCCCCCTACAGTAGTGAAATAGCTCCAGGCCACCACGTCTCACGACATGTTCCTTACCGAGGT CGCGGGTGGGCGCCTTATCGTGGACGACACTACGCACGAGGACGTCATGTAGCCCCCCATCGCCACCGTACCCTC ATCCTCAACAACGCAACATCAGGTACACCTGGATCGGCTACTCCAGCTGGCACGGGGACTGATACAGACGGTGAG GCGCGATCTGCAACACCAAACGAATGGGTTGTGAAACGCGATCGTCATATGCAGCTCATCAACACTTCGATATAC GACAAAGAGACACAAGCGAGGACGAAGGCAATGGAGGAGAGTCGCCAGGCCAAGGCGCAAAAGAGAGCACAGGTC GAGCAGGCTAGAGTTTTGAATTACGCACAGGGTGTTGGCCGAGTGCATCCTACGGGCTTCGCGGCTCCTCAGGTG TCTACTGCAGACCCGTCAGCGGAGTATCAGGTTTTCGTCAACGATATACCGTTCCGAGTGTCGCGTGGTGGTGGC AAGCTAATCCGGGTGTCTGATAATCCGAATACTGCCAACGCTACGCCAAAACGAGTGACAGTGGCAGGCGTCGCT TTTGTCCGGAGCAAGAACGGAAATCTCCACCGTTTGGGTGCTGTTACATCAAAAAGAAAACCAATGACGGTCAAG AAGAAGAACGCGCTTTGCCAGCGATTTACTACGACGGGCAGCTGCTACAAAGGACCAACATGCCCCTATATTCAC GACCCGAACAAGGTTGCAATGTGCAAGGACTTCCTTCAGACTGGTCAATGCAATGCAGGTATAAGTTGTGATCTC TCTCACGAGCCTTCGCCCCACAGATCCCCTGCCTGCGTGCATTTTCTGCGAGGGCGCTGCTCCAACCCCGAATGT CGCTATGCCCATGTTCGCGTGACCCCGGGCGCTCCTGTGTGCAGGGACTTTGCGGTTCTAGGATACTGCGAAAAA GGTGCCGAATGCGACCAACGACACGTTCACGAATGCCCAGACTATGCGAATGAGGGCGTTTGCAACAAGAAGCGC TGCCGCCTTCCCCATGTTGATCGGGCCGGACAGATCAGGAAAAACGCCGCTTCTAAGACCGATGCTATGGCCCAA GCGGAGGAGTCTGATGCATCTAGCGAGGAGGAAGAGTACGATGAGATTGACACGGATGACGTCGATTCGGACGAT CTCGATGAGGATGAGCCCCAACTCATCGCGGCCGAGTCAGATACTGGCGAGGTGTCGCAACAACAGGACTACATC CGTCTCTAA |
Transcript | >Ani_SJS100_1|g9786.t1 ATGACAGAAGATCAGGATCTGATGGCCAAAATCAGCCAGCTTGCTGGCCAGATTAATAGGCACAAAACCCAACAA TCTCAACCTGAGTCCCCCTACAGTAGTGAAATAGCTCCAGGCCACCACGTCTCACGACATGTTCCTTACCGAGGT CGCGGGTGGGCGCCTTATCGTGGACGACACTACGCACGAGGACGTCATGTAGCCCCCCATCGCCACCGTACCCTC ATCCTCAACAACGCAACATCAGGTACACCTGGATCGGCTACTCCAGCTGGCACGGGGACTGATACAGACGGTGAG GCGCGATCTGCAACACCAAACGAATGGGTTGTGAAACGCGATCGTCATATGCAGCTCATCAACACTTCGATATAC GACAAAGAGACACAAGCGAGGACGAAGGCAATGGAGGAGAGTCGCCAGGCCAAGGCGCAAAAGAGAGCACAGGTC GAGCAGGCTAGAGTTTTGAATTACGCACAGGGTGTTGGCCGAGTGCATCCTACGGGCTTCGCGGCTCCTCAGGTG TCTACTGCAGACCCGTCAGCGGAGTATCAGGTTTTCGTCAACGATATACCGTTCCGAGTGTCGCGTGGTGGTGGC AAGCTAATCCGGGTGTCTGATAATCCGAATACTGCCAACGCTACGCCAAAACGAGTGACAGTGGCAGGCGTCGCT TTTGTCCGGAGCAAGAACGGAAATCTCCACCGTTTGGGTGCTGTTACATCAAAAAGAAAACCAATGACGGTCAAG AAGAAGAACGCGCTTTGCCAGCGATTTACTACGACGGGCAGCTGCTACAAAGGACCAACATGCCCCTATATTCAC GACCCGAACAAGGTTGCAATGTGCAAGGACTTCCTTCAGACTGGTCAATGCAATGCAGGTATAAGTTGTGATCTC TCTCACGAGCCTTCGCCCCACAGATCCCCTGCCTGCGTGCATTTTCTGCGAGGGCGCTGCTCCAACCCCGAATGT CGCTATGCCCATGTTCGCGTGACCCCGGGCGCTCCTGTGTGCAGGGACTTTGCGGTTCTAGGATACTGCGAAAAA GGTGCCGAATGCGACCAACGACACGTTCACGAATGCCCAGACTATGCGAATGAGGGCGTTTGCAACAAGAAGCGC TGCCGCCTTCCCCATGTTGATCGGGCCGGACAGATCAGGAAAAACGCCGCTTCTAAGACCGATGCTATGGCCCAA GCGGAGGAGTCTGATGCATCTAGCGAGGAGGAAGAGTACGATGAGATTGACACGGATGACGTCGATTCGGACGAT CTCGATGAGGATGAGCCCCAACTCATCGCGGCCGAGTCAGATACTGGCGAGGTGTCGCAACAACAGGACTACATC CGTCTCTAA |
Gene | >Ani_SJS100_1|g9786.t1 ATGACAGAAGATCAGGATCTGATGGCCAAAATCAGCCAGCTTGCTGGTAAGCGCATTCTAGCTATCCGTAACCGT GCCAGCCTCTAACCTCATCCAGGCCAGATTAATAGGCACAAAACCCAACAATCTCAACCTGAGTCCCCCTACAGT AGTGAAATAGCTCCAGGCCACCACGTCTCACGACATGTTCCTTACCGAGGTCGCGGGTGGGCGCCTTATCGTGGA CGACACTACGCACGAGGACGTCATGTAGCCCCCCATCGCCACCGTACCCTCATCCTCAACAACGCAACATCAGGT ACACCTGGATCGGCTACTCCAGCTGGCACGGGGACTGATACAGACGGTGAGGCGCGATCTGCAACACCAAACGAA TGGGTTGTGAAACGCGATCGTCATATGCAGCTCATCAACACTTCGATATACGACAAAGAGACACAAGCGAGGACG AAGGCAATGGAGGAGAGTCGCCAGGCCAAGGCGCAAAAGAGAGCACAGGTCGAGCAGGCTAGAGTTTTGAATTAC GCACAGGGTGTTGGCCGAGTGCATCCTACGGGCTTCGCGGCTCCTCAGGTGTCTACTGCAGACCCGTCAGCGGAG TATCAGGTTTTCGTCAACGATATACCGTTCCGAGTGTCGCGTGGTGGTGGCAAGCTAATCCGGGTGTCTGGTGCG TGCGCTGTAGATACTCTGGTCAAGCGAACTAGCTTACCGGTTATAGATAATCCGAATACTGCCAACGCTACGCCA AAACGAGTGACAGTGGCAGGCGTCGCTTTTGTCCGGAGCAAGAACGGAAATCTCCACCGTTTGGGTGCTGTTACA TCAAAAAGGTGGCGGCTGTGTTGTCCATGTGGCGAGTTTGGAAGCTTACTTCATTTATAGAAAACCAATGACGGT CAAGAAGAAGAACGCGCTTTGCCAGCGATTTACTACGACGGGTACCAATGCTTTCCCTACACGAGGCCCTGAGTG GCACTTGCCCCCATCTCATTATTTGTTTCATCTTCTGCGGGATCACGCTGATCAGGATCTTCAACCGTTTAGGCA GCTGCTACAAAGGACCAACATGCCCCTATATTCACGACCCGAACAAGGTTGCAATGTGCAAGGACTTCCTTCAGA CTGGTCAATGCAATGCAGGTATAAGTTGTGATCTCTCTCACGAGCCTTCGCCCCACAGATCCCCTGCCTGCGTGC ATTTTCTGCGAGGGCGCTGCTCCAACCCCGAATGTCGCTATGCCCATGTTCGCGTGACCCCGGGCGCTCCTGTGT GCAGGGACTTTGCGGTTCTAGGATACTGCGAAAAAGGTGCCGAATGCGACCAACGACACGTTCACGAATGCCCAG ACTATGCGAATGAGGGCGTTTGCAACAAGAAGCGCTGCCGCCTTCCCCATGTTGATCGGGCCGGACAGATCAGGA AAAACGCCGCTTCTAAGACCGATGCTATGGCCCAAGCGGAGGAGTCTGATGCATCTAGCGAGGAGGAAGAGTACG ATGAGATTGACACGGATGACGTCGATTCGGACGATCTCGATGAGGATGAGCCCCAACTCATCGCGGCCGAGTCAG ATACTGGCGAGGTGTCGCAACAACAGGACTACATCCGTCTCTAA |