Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g970.t1
Gene name
Locationscaffold_003:476649..477386
Strand+
Gene length (bp)737
Transcript length (bp)570
Coding sequence length (bp)570
Protein length (aa) 190

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04900 Fcf1 Fcf1 1.4E-31 87 183
PF18477 PIN_9 PIN like domain 3.7E-06 64 173

GO

GO Term Description Terminal node
GO:0032040 small-subunit processome Yes
GO:1990904 ribonucleoprotein complex No
GO:0030684 preribosome No
GO:0032991 protein-containing complex No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 41 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g970.t1
MGVQKKTRKFAQMKRAIKARDERLKKPEAKKETPKEDQLTRQVTQAPSNMFFAANTALGPPYHVLVDTNFVSHAI
RAKQDLLTSMMDLLYAKCIPTFSDCTIAELEKLGDKYRLALRVAKDPRWSRVKCSHKGTYADDCIVDRVTKHRIY
IVATNDQDLCRRLRKIPGVPIMKVARGKFTIEKLPDALD*
Coding >Ani_SJS100_1|g970.t1
ATGGGTGTGCAAAAGAAGACTCGCAAGTTCGCGCAGATGAAGCGCGCCATCAAAGCCCGTGATGAGCGACTGAAG
AAGCCGGAAGCGAAAAAGGAGACGCCCAAGGAGGATCAGCTGACTCGACAAGTCACCCAAGCTCCTTCGAACATG
TTCTTTGCCGCGAACACTGCCCTTGGCCCTCCCTACCACGTGCTGGTCGATACCAACTTTGTTTCCCACGCCATT
CGAGCCAAGCAGGACCTACTTACTTCGATGATGGACTTGCTGTACGCGAAGTGTATTCCGACCTTCTCAGACTGC
ACTATCGCGGAATTGGAAAAGCTGGGTGACAAGTACCGCCTCGCACTTCGGGTTGCCAAAGACCCTCGGTGGTCT
AGGGTTAAGTGCTCTCACAAGGGTACCTATGCAGATGACTGTATCGTGGATCGGGTGACCAAGCATAGAATTTAC
ATTGTGGCGACCAATGATCAAGATCTGTGTCGCCGCCTGCGCAAGATTCCTGGTGTTCCGATCATGAAGGTTGCT
AGGGGCAAATTCACCATCGAGAAGTTGCCCGATGCTTTGGATTAA
Transcript >Ani_SJS100_1|g970.t1
ATGGGTGTGCAAAAGAAGACTCGCAAGTTCGCGCAGATGAAGCGCGCCATCAAAGCCCGTGATGAGCGACTGAAG
AAGCCGGAAGCGAAAAAGGAGACGCCCAAGGAGGATCAGCTGACTCGACAAGTCACCCAAGCTCCTTCGAACATG
TTCTTTGCCGCGAACACTGCCCTTGGCCCTCCCTACCACGTGCTGGTCGATACCAACTTTGTTTCCCACGCCATT
CGAGCCAAGCAGGACCTACTTACTTCGATGATGGACTTGCTGTACGCGAAGTGTATTCCGACCTTCTCAGACTGC
ACTATCGCGGAATTGGAAAAGCTGGGTGACAAGTACCGCCTCGCACTTCGGGTTGCCAAAGACCCTCGGTGGTCT
AGGGTTAAGTGCTCTCACAAGGGTACCTATGCAGATGACTGTATCGTGGATCGGGTGACCAAGCATAGAATTTAC
ATTGTGGCGACCAATGATCAAGATCTGTGTCGCCGCCTGCGCAAGATTCCTGGTGTTCCGATCATGAAGGTTGCT
AGGGGCAAATTCACCATCGAGAAGTTGCCCGATGCTTTGGATTAA
Gene >Ani_SJS100_1|g970.t1
ATGGGTGTGCAAAAGAAGACTCGCAAGTTCGCGCAGGTATGTCTCTGTGGCTTCGCAGCAGATACGGAACGGAAA
CTGATCCTACTGAATCTATAGATGAAGCGCGCCATCAAAGCCCGTGATGAGCGACTGAAGAAGCCGGAAGCGAAA
AAGGAGACGCCCAAGGAGGATCAGCTGACTCGACAAGTCACCCAAGCTCCTTCGAACATGTTCTTTGCCGCGAAC
ACTGCCCTTGGCCCTCCCTACCACGTGCTGGTCGATACCAACTTTGTTTCCCACGCCATTCGAGCCAAGCAGGAC
CTACTTACTTCGATGATGGACTTGTGAGTTGGAACACTATTTGGACTTTGGATATATGCTAAGACTGGCTGCAGG
CTGTACGCGAAGTGTATTCCGACCTTCTCAGACTGCACTATCGCGGAATTGGAAAAGCTGGGTGACAAGTACCGC
CTCGCACTTCGGGTTGCCAAAGACCCTCGGTGGTCTAGGGTTAAGTGCTCTCACAAGGGTACCTATGCAGATGAC
TGTATCGTGGATCGGGTGAGTGGTTACTCAAATTTTTCTTGGGTAGCACAGCGCGCTAACGACTCTTGTAGGTGA
CCAAGCATAGAATTTACATTGTGGCGACCAATGATCAAGATCTGTGTCGCCGCCTGCGCAAGATTCCTGGTGTTC
CGATCATGAAGGTTGCTAGGGGCAAATTCACCATCGAGAAGTTGCCCGATGCTTTGGATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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