Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g9538.t1
Gene name
Locationscaffold_088:124924..125308
Strand-
Gene length (bp)384
Transcript length (bp)384
Coding sequence length (bp)384
Protein length (aa) 128

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08229 SHR3_chaperone ER membrane protein SH3 1.5E-44 1 126

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 36 0.5

Transmembrane Domains

Domain # Start End Length
1 10 32 22
2 71 93 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g9538.t1
MKLYKPSESNMLFDGASLVLYMCGITVYIANIVKGLRLVSGGVYGDELVKGGEEEVEQGQILGREDSLKVLAASN
TILALVLVGVLVLQAGQWYAERKEAQEVESFASSSSKGKKEEGSEGGKKKKN*
Coding >Ani_SJS100_1|g9538.t1
ATGAAGCTGTACAAACCCTCGGAATCGAATATGTTGTTCGATGGCGCCAGTCTCGTGCTGTATATGTGTGGAATT
ACGGTCTATATTGCGAATATTGTGAAGGGGTTGAGGTTGGTTAGTGGTGGGGTTTATGGGGATGAGTTGGTCAAA
GGTGGGGAGGAGGAGGTCGAGCAAGGGCAGATTCTGGGTAGGGAGGATAGTTTGAAGGTGTTGGCGGCGAGTAAT
ACTATCTTGGCGCTGGTGTTGGTGGGTGTGCTGGTGTTGCAGGCCGGGCAGTGGTATGCGGAGAGGAAGGAGGCG
CAGGAGGTGGAGAGTTTTGCTTCTTCGAGTTCGAAGGGGAAGAAGGAGGAGGGGAGTGAGGGGGGGAAGAAGAAG
AAGAATTGA
Transcript >Ani_SJS100_1|g9538.t1
ATGAAGCTGTACAAACCCTCGGAATCGAATATGTTGTTCGATGGCGCCAGTCTCGTGCTGTATATGTGTGGAATT
ACGGTCTATATTGCGAATATTGTGAAGGGGTTGAGGTTGGTTAGTGGTGGGGTTTATGGGGATGAGTTGGTCAAA
GGTGGGGAGGAGGAGGTCGAGCAAGGGCAGATTCTGGGTAGGGAGGATAGTTTGAAGGTGTTGGCGGCGAGTAAT
ACTATCTTGGCGCTGGTGTTGGTGGGTGTGCTGGTGTTGCAGGCCGGGCAGTGGTATGCGGAGAGGAAGGAGGCG
CAGGAGGTGGAGAGTTTTGCTTCTTCGAGTTCGAAGGGGAAGAAGGAGGAGGGGAGTGAGGGGGGGAAGAAGAAG
AAGAATTGA
Gene >Ani_SJS100_1|g9538.t1
ATGAAGCTGTACAAACCCTCGGAATCGAATATGTTGTTCGATGGCGCCAGTCTCGTGCTGTATATGTGTGGAATT
ACGGTCTATATTGCGAATATTGTGAAGGGGTTGAGGTTGGTTAGTGGTGGGGTTTATGGGGATGAGTTGGTCAAA
GGTGGGGAGGAGGAGGTCGAGCAAGGGCAGATTCTGGGTAGGGAGGATAGTTTGAAGGTGTTGGCGGCGAGTAAT
ACTATCTTGGCGCTGGTGTTGGTGGGTGTGCTGGTGTTGCAGGCCGGGCAGTGGTATGCGGAGAGGAAGGAGGCG
CAGGAGGTGGAGAGTTTTGCTTCTTCGAGTTCGAAGGGGAAGAAGGAGGAGGGGAGTGAGGGGGGGAAGAAGAAG
AAGAATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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