Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g9538.t1
Gene name
Location	scaffold_088:124924..125308
Strand	-
Gene length (bp)	384
Transcript length (bp)	384
Coding sequence length (bp)	384
Protein length (aa)	128

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF08229	SHR3_chaperone	ER membrane protein SH3	1.5E-44	1	126

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 36	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	10	32	22
2	71	93	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g9538.t1 MKLYKPSESNMLFDGASLVLYMCGITVYIANIVKGLRLVSGGVYGDELVKGGEEEVEQGQILGREDSLKVLAASN TILALVLVGVLVLQAGQWYAERKEAQEVESFASSSSKGKKEEGSEGGKKKKN*
Coding	>Ani_SJS100_1\|g9538.t1 ATGAAGCTGTACAAACCCTCGGAATCGAATATGTTGTTCGATGGCGCCAGTCTCGTGCTGTATATGTGTGGAATT ACGGTCTATATTGCGAATATTGTGAAGGGGTTGAGGTTGGTTAGTGGTGGGGTTTATGGGGATGAGTTGGTCAAA GGTGGGGAGGAGGAGGTCGAGCAAGGGCAGATTCTGGGTAGGGAGGATAGTTTGAAGGTGTTGGCGGCGAGTAAT ACTATCTTGGCGCTGGTGTTGGTGGGTGTGCTGGTGTTGCAGGCCGGGCAGTGGTATGCGGAGAGGAAGGAGGCG CAGGAGGTGGAGAGTTTTGCTTCTTCGAGTTCGAAGGGGAAGAAGGAGGAGGGGAGTGAGGGGGGGAAGAAGAAG AAGAATTGA
Transcript	>Ani_SJS100_1\|g9538.t1 ATGAAGCTGTACAAACCCTCGGAATCGAATATGTTGTTCGATGGCGCCAGTCTCGTGCTGTATATGTGTGGAATT ACGGTCTATATTGCGAATATTGTGAAGGGGTTGAGGTTGGTTAGTGGTGGGGTTTATGGGGATGAGTTGGTCAAA GGTGGGGAGGAGGAGGTCGAGCAAGGGCAGATTCTGGGTAGGGAGGATAGTTTGAAGGTGTTGGCGGCGAGTAAT ACTATCTTGGCGCTGGTGTTGGTGGGTGTGCTGGTGTTGCAGGCCGGGCAGTGGTATGCGGAGAGGAAGGAGGCG CAGGAGGTGGAGAGTTTTGCTTCTTCGAGTTCGAAGGGGAAGAAGGAGGAGGGGAGTGAGGGGGGGAAGAAGAAG AAGAATTGA
Gene	>Ani_SJS100_1\|g9538.t1 ATGAAGCTGTACAAACCCTCGGAATCGAATATGTTGTTCGATGGCGCCAGTCTCGTGCTGTATATGTGTGGAATT ACGGTCTATATTGCGAATATTGTGAAGGGGTTGAGGTTGGTTAGTGGTGGGGTTTATGGGGATGAGTTGGTCAAA GGTGGGGAGGAGGAGGTCGAGCAAGGGCAGATTCTGGGTAGGGAGGATAGTTTGAAGGTGTTGGCGGCGAGTAAT ACTATCTTGGCGCTGGTGTTGGTGGGTGTGCTGGTGTTGCAGGCCGGGCAGTGGTATGCGGAGAGGAAGGAGGCG CAGGAGGTGGAGAGTTTTGCTTCTTCGAGTTCGAAGGGGAAGAAGGAGGAGGGGAGTGAGGGGGGGAAGAAGAAG AAGAATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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