© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g9506.t1 |
| Gene name | |
| Location | scaffold_088:39723..41124 |
| Strand | + |
| Gene length (bp) | 1401 |
| Transcript length (bp) | 1338 |
| Coding sequence length (bp) | 1338 |
| Protein length (aa) | 446 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01733 | Nucleoside_tran | Nucleoside transporter | 1.6E-13 | 149 | 244 |
| PF01733 | Nucleoside_tran | Nucleoside transporter | 6.9E-31 | 253 | 442 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:1901642 | nucleoside transmembrane transport | Yes |
| GO:0005337 | nucleoside transmembrane transporter activity | Yes |
| GO:0051179 | localization | No |
| GO:0015931 | nucleobase-containing compound transport | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1901505 | carbohydrate derivative transmembrane transporter activity | No |
| GO:0015932 | nucleobase-containing compound transmembrane transporter activity | No |
| GO:1901264 | carbohydrate derivative transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008150 | biological_process | No |
| GO:0071702 | organic substance transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0015858 | nucleoside transport | No |
| GO:0005215 | transporter activity | No |
| GO:0055085 | transmembrane transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 48 | 70 | 22 |
| 2 | 80 | 102 | 22 |
| 3 | 115 | 134 | 19 |
| 4 | 139 | 161 | 22 |
| 5 | 182 | 201 | 19 |
| 6 | 221 | 243 | 22 |
| 7 | 280 | 302 | 22 |
| 8 | 317 | 339 | 22 |
| 9 | 346 | 368 | 22 |
| 10 | 383 | 400 | 17 |
| 11 | 421 | 443 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g9506.t1 MDRIRGLIARRPTYEAIEQPVDADDESIRSTREEEQHPRFSKYEYAVFFLLGVSMLWAWNMFLAAAPYFYHRFHT DDWAATHYQPLILTVSTVTNLGSSFILAKLQKGASYPKRVTISLLINIVVFTLLAFSTILMKDVAVSTYFSFLMI MVFGASLATGINQNGVYAYVSGFGREEYTQAIMGGQGVAGVLPCIVQILSVVSVPSKKEGQKAPQESSKSAFAYF ITATAVSSFALLAFLSLVKRRASSTLLDPTDDHSDPDVPENKSVSLWTLFKKLRFMASAIFLCFTVTMTFPVFTA EIESVHDIPGRSRLFDQAVFIPLAFFFWNAGDLMGRMLVLFPRLSLVNRPFVLFLFSIARAAFIPLYLLCNIRGR GAVVESDFFYLFIVQLLFGISNGYLGSNCMMGAGQWVSPDEREPAGGFMGLMLVGGLTAGSLMSFLVAGA* |
| Coding | >Ani_SJS100_1|g9506.t1 ATGGACCGCATCCGCGGGCTTATCGCTCGCCGGCCTACGTATGAAGCAATCGAGCAGCCGGTTGACGCCGACGAT GAGAGCATCCGCTCAACTCGTGAAGAGGAGCAGCATCCCCGTTTCTCCAAATATGAATACGCAGTATTCTTTCTC CTGGGAGTATCTATGCTATGGGCATGGAACATGTTCCTCGCCGCTGCACCATACTTCTACCACCGTTTCCACACA GACGACTGGGCAGCAACCCATTATCAGCCTTTAATATTGACCGTATCCACCGTTACTAACCTAGGTTCCTCGTTC ATCCTAGCCAAACTACAGAAGGGAGCGTCCTATCCGAAGCGTGTCACCATCTCTCTGCTTATCAACATCGTGGTG TTCACGCTCCTGGCCTTCTCCACTATCCTGATGAAGGATGTCGCAGTGAGCACATACTTCAGCTTTCTCATGATC ATGGTGTTCGGGGCCAGTCTTGCGACCGGAATAAACCAGAATGGCGTGTACGCTTACGTCTCCGGCTTTGGAAGA GAGGAGTATACCCAAGCCATCATGGGCGGCCAAGGCGTAGCGGGTGTCCTACCCTGCATTGTCCAGATCCTCTCC GTGGTCTCCGTGCCAAGTAAGAAGGAAGGACAAAAAGCACCACAGGAGTCCTCCAAATCCGCTTTCGCCTACTTT ATCACGGCGACAGCCGTGTCGTCCTTTGCTCTGCTAGCCTTCCTATCCCTCGTCAAGCGACGCGCATCCTCAACC CTCTTAGACCCAACGGACGACCACAGCGACCCAGATGTGCCTGAGAACAAGTCCGTCAGCCTCTGGACGCTCTTC AAAAAGCTCCGCTTCATGGCCTCGGCCATCTTCCTCTGCTTCACAGTCACCATGACCTTCCCCGTCTTTACAGCG GAGATCGAATCCGTCCACGACATTCCCGGACGATCTCGACTCTTTGATCAGGCTGTCTTCATCCCTCTTGCATTC TTCTTCTGGAATGCAGGTGATCTGATGGGCCGAATGCTCGTCCTGTTTCCCCGTCTCTCCCTTGTTAACCGTCCC TTCGTGTTGTTCCTCTTTTCGATTGCTCGAGCCGCATTCATCCCGCTGTATCTTCTCTGCAACATTCGCGGCCGG GGTGCAGTCGTCGAGAGCGATTTCTTCTACCTATTTATCGTGCAGTTGCTGTTCGGCATAAGCAACGGGTACCTG GGAAGTAATTGCATGATGGGCGCTGGACAGTGGGTGTCTCCTGATGAACGTGAACCTGCAGGTGGGTTCATGGGA TTGATGCTCGTAGGTGGGCTAACTGCGGGAAGCTTGATGAGCTTTCTGGTTGCTGGTGCTTGA |
| Transcript | >Ani_SJS100_1|g9506.t1 ATGGACCGCATCCGCGGGCTTATCGCTCGCCGGCCTACGTATGAAGCAATCGAGCAGCCGGTTGACGCCGACGAT GAGAGCATCCGCTCAACTCGTGAAGAGGAGCAGCATCCCCGTTTCTCCAAATATGAATACGCAGTATTCTTTCTC CTGGGAGTATCTATGCTATGGGCATGGAACATGTTCCTCGCCGCTGCACCATACTTCTACCACCGTTTCCACACA GACGACTGGGCAGCAACCCATTATCAGCCTTTAATATTGACCGTATCCACCGTTACTAACCTAGGTTCCTCGTTC ATCCTAGCCAAACTACAGAAGGGAGCGTCCTATCCGAAGCGTGTCACCATCTCTCTGCTTATCAACATCGTGGTG TTCACGCTCCTGGCCTTCTCCACTATCCTGATGAAGGATGTCGCAGTGAGCACATACTTCAGCTTTCTCATGATC ATGGTGTTCGGGGCCAGTCTTGCGACCGGAATAAACCAGAATGGCGTGTACGCTTACGTCTCCGGCTTTGGAAGA GAGGAGTATACCCAAGCCATCATGGGCGGCCAAGGCGTAGCGGGTGTCCTACCCTGCATTGTCCAGATCCTCTCC GTGGTCTCCGTGCCAAGTAAGAAGGAAGGACAAAAAGCACCACAGGAGTCCTCCAAATCCGCTTTCGCCTACTTT ATCACGGCGACAGCCGTGTCGTCCTTTGCTCTGCTAGCCTTCCTATCCCTCGTCAAGCGACGCGCATCCTCAACC CTCTTAGACCCAACGGACGACCACAGCGACCCAGATGTGCCTGAGAACAAGTCCGTCAGCCTCTGGACGCTCTTC AAAAAGCTCCGCTTCATGGCCTCGGCCATCTTCCTCTGCTTCACAGTCACCATGACCTTCCCCGTCTTTACAGCG GAGATCGAATCCGTCCACGACATTCCCGGACGATCTCGACTCTTTGATCAGGCTGTCTTCATCCCTCTTGCATTC TTCTTCTGGAATGCAGGTGATCTGATGGGCCGAATGCTCGTCCTGTTTCCCCGTCTCTCCCTTGTTAACCGTCCC TTCGTGTTGTTCCTCTTTTCGATTGCTCGAGCCGCATTCATCCCGCTGTATCTTCTCTGCAACATTCGCGGCCGG GGTGCAGTCGTCGAGAGCGATTTCTTCTACCTATTTATCGTGCAGTTGCTGTTCGGCATAAGCAACGGGTACCTG GGAAGTAATTGCATGATGGGCGCTGGACAGTGGGTGTCTCCTGATGAACGTGAACCTGCAGGTGGGTTCATGGGA TTGATGCTCGTAGGTGGGCTAACTGCGGGAAGCTTGATGAGCTTTCTGGTTGCTGGTGCTTGA |
| Gene | >Ani_SJS100_1|g9506.t1 ATGGACCGCATCCGCGGGCTTATCGCTCGCCGGCCTACGTATGAAGCAATCGAGCAGCCGGTTGACGCCGACGAT GAGAGCATCCGCTCAACTCGTGAAGAGGAGCAGCATCCCCGTTTCTCCAAATATGAATACGCAGTATTCTTTCTC CTGGGAGTATCTATGCTATGGGCATGGTATGTCCGACCTTACAACATCCGCATTGACTGCATCTATCTGACTAGA CCGGGACGTCATAGGAACATGTTCCTCGCCGCTGCACCATACTTCTACCACCGTTTCCACACAGACGACTGGGCA GCAACCCATTATCAGCCTTTAATATTGACCGTATCCACCGTTACTAACCTAGGTTCCTCGTTCATCCTAGCCAAA CTACAGAAGGGAGCGTCCTATCCGAAGCGTGTCACCATCTCTCTGCTTATCAACATCGTGGTGTTCACGCTCCTG GCCTTCTCCACTATCCTGATGAAGGATGTCGCAGTGAGCACATACTTCAGCTTTCTCATGATCATGGTGTTCGGG GCCAGTCTTGCGACCGGAATAAACCAGAATGGCGTGTACGCTTACGTCTCCGGCTTTGGAAGAGAGGAGTATACC CAAGCCATCATGGGCGGCCAAGGCGTAGCGGGTGTCCTACCCTGCATTGTCCAGATCCTCTCCGTGGTCTCCGTG CCAAGTAAGAAGGAAGGACAAAAAGCACCACAGGAGTCCTCCAAATCCGCTTTCGCCTACTTTATCACGGCGACA GCCGTGTCGTCCTTTGCTCTGCTAGCCTTCCTATCCCTCGTCAAGCGACGCGCATCCTCAACCCTCTTAGACCCA ACGGACGACCACAGCGACCCAGATGTGCCTGAGAACAAGTCCGTCAGCCTCTGGACGCTCTTCAAAAAGCTCCGC TTCATGGCCTCGGCCATCTTCCTCTGCTTCACAGTCACCATGACCTTCCCCGTCTTTACAGCGGAGATCGAATCC GTCCACGACATTCCCGGACGATCTCGACTCTTTGATCAGGCTGTCTTCATCCCTCTTGCATTCTTCTTCTGGAAT GCAGGTGATCTGATGGGCCGAATGCTCGTCCTGTTTCCCCGTCTCTCCCTTGTTAACCGTCCCTTCGTGTTGTTC CTCTTTTCGATTGCTCGAGCCGCATTCATCCCGCTGTATCTTCTCTGCAACATTCGCGGCCGGGGTGCAGTCGTC GAGAGCGATTTCTTCTACCTATTTATCGTGCAGTTGCTGTTCGGCATAAGCAACGGGTACCTGGGAAGTAATTGC ATGATGGGCGCTGGACAGTGGGTGTCTCCTGATGAACGTGAACCTGCAGGTGGGTTCATGGGATTGATGCTCGTA GGTGGGCTAACTGCGGGAAGCTTGATGAGCTTTCTGGTTGCTGGTGCTTGA |