© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g9475.t1 |
| Gene name | |
| Location | scaffold_087:18293..19513 |
| Strand | + |
| Gene length (bp) | 1220 |
| Transcript length (bp) | 765 |
| Coding sequence length (bp) | 765 |
| Protein length (aa) | 255 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01545 | Cation_efflux | Cation efflux family | 1.5E-28 | 13 | 122 |
| PF01545 | Cation_efflux | Cation efflux family | 5.9E-15 | 165 | 232 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0006811 | ion transport | No |
| GO:0005215 | transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
| 2 | 38 | 60 | 22 |
| 3 | 81 | 103 | 22 |
| 4 | 173 | 195 | 22 |
| 5 | 202 | 224 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g9475.t1 MTTDAKLNRERRLLLVICISFSFFIAEIGVGFYTRSLALVADAFHYLNDLVGFIVAFAAVKISARDESPKDLSFG WQRAQLLGAFFNGVFLLALGVSIFLQSIERFVSLQRVEKPKLILIVGCDHAHDGEPAINEGAEASLDEDMAVTRH QEHRHQANPRKTAGYDLGMLGVLLHVIGDAINNVGVIISALVIWLAHYDGKYYADPGVSMGIAMMILISSIPLVK RSGSILLESVPPGIDLRDIKHDLEKVSRP* |
| Coding | >Ani_SJS100_1|g9475.t1 ATGACGACCGACGCAAAGCTGAATCGTGAGCGCCGGCTTCTGCTTGTTATTTGCATCTCCTTTTCCTTTTTTATC GCTGAGATTGGCGTCGGATTCTACACACGCTCTCTCGCGCTCGTTGCCGATGCGTTCCATTATCTCAATGACCTC GTGGGCTTTATCGTGGCGTTTGCTGCTGTCAAGATATCGGCACGGGATGAGTCTCCCAAAGACCTTTCTTTCGGC TGGCAACGAGCACAATTACTGGGGGCATTTTTCAACGGCGTCTTTCTCCTGGCGTTAGGGGTCAGCATCTTCCTA CAGTCCATCGAAAGATTTGTATCCCTCCAGCGCGTCGAGAAACCAAAGCTCATTCTCATCGTCGGATGCGACCAC GCGCACGACGGAGAGCCCGCGATAAACGAAGGCGCAGAGGCTTCACTTGATGAAGATATGGCCGTCACGCGTCAC CAAGAACACCGACACCAGGCGAATCCACGGAAAACGGCCGGGTATGATCTTGGCATGCTAGGCGTGCTTCTTCAC GTCATTGGCGACGCGATTAACAACGTGGGCGTCATCATCTCTGCGTTAGTCATCTGGTTGGCCCATTATGACGGG AAATACTACGCAGATCCTGGAGTCAGCATGGGGATCGCGATGATGATCCTCATATCATCAATTCCCCTAGTCAAA AGATCCGGCTCCATTCTTCTTGAAAGCGTACCTCCTGGGATTGACCTGAGAGACATAAAGCACGATTTGGAAAAG GTTAGTCGGCCTTAA |
| Transcript | >Ani_SJS100_1|g9475.t1 ATGACGACCGACGCAAAGCTGAATCGTGAGCGCCGGCTTCTGCTTGTTATTTGCATCTCCTTTTCCTTTTTTATC GCTGAGATTGGCGTCGGATTCTACACACGCTCTCTCGCGCTCGTTGCCGATGCGTTCCATTATCTCAATGACCTC GTGGGCTTTATCGTGGCGTTTGCTGCTGTCAAGATATCGGCACGGGATGAGTCTCCCAAAGACCTTTCTTTCGGC TGGCAACGAGCACAATTACTGGGGGCATTTTTCAACGGCGTCTTTCTCCTGGCGTTAGGGGTCAGCATCTTCCTA CAGTCCATCGAAAGATTTGTATCCCTCCAGCGCGTCGAGAAACCAAAGCTCATTCTCATCGTCGGATGCGACCAC GCGCACGACGGAGAGCCCGCGATAAACGAAGGCGCAGAGGCTTCACTTGATGAAGATATGGCCGTCACGCGTCAC CAAGAACACCGACACCAGGCGAATCCACGGAAAACGGCCGGGTATGATCTTGGCATGCTAGGCGTGCTTCTTCAC GTCATTGGCGACGCGATTAACAACGTGGGCGTCATCATCTCTGCGTTAGTCATCTGGTTGGCCCATTATGACGGG AAATACTACGCAGATCCTGGAGTCAGCATGGGGATCGCGATGATGATCCTCATATCATCAATTCCCCTAGTCAAA AGATCCGGCTCCATTCTTCTTGAAAGCGTACCTCCTGGGATTGACCTGAGAGACATAAAGCACGATTTGGAAAAG GTTAGTCGGCCTTAA |
| Gene | >Ani_SJS100_1|g9475.t1 ATGACGACCGACGCAAAGCTGAATCGTGAGCGCCGGCTTCTGCTTGTTATTTGCATCTCCTTTTCCTTTTTTATC GCTGAGATTGGCGGTACGTATCCTGGTTCTGCATTCACTTCATTAAGAATGATGTTCATCTCTTGTTCGCAATAC AGTCGGATTCTACACACGCTCTCTCGCGCTCGTTGCCGATGCGTTCCATTATGTGGGTCTGAGAACCGCTCGAAA ATAAACACCATCCTAACAACTACAGCTCAATGACCTCGTGGGCTTTATCGTGGCGTTTGCTGCTGTCAAGGTGAG ACAAACGGAGGGGTGAGTTTCTGTAGCCACTTATTGATGATAATTAGATATCGGCACGGGATGAGTCTCCCAAAG ACCTTTCTTTCGGCTGGCAACGAGCACAATTACTGGGGGCATTTTTCAACGGCGTCTTTCTCCTGGCGTTAGGGG TCAGCATCTTCCTACAGTCCATCGAAAGATTTGTATCCCTCCAGCGTATGGGAAATGGCCCTTTGCGACGTTCGA GTCCCTTACTCACATTCATCGTCTAGGCGTCGAGAAACCAAAGCTCATTCTCATCGTCGGATGCGTTGGTCTAGC ACTTAATATCATAAGTGCCACATTTTTACACGGTTGGCTGATCCCGTTCTTCTCAATGGCCATAACTGATTGCCT TTTTTATATTCTGAAGAGCATGATCATGATCATGGAAAGGACCACGCGCACGACGGAGAGCCCGCGATAAACGAA GGCGCAGAGGCTTCACTTGATGAAGATATGGTGAGCATCTCTTGAAATCTTCGCAACCACAGTACAAAATTCTGA CGTTTAGACAGGCCGTCACGCGTCACCAAGAACACCGACACCAGGCGAATCCACGGAAAACGGCCGGGTATGATC TTGGCATGCTAGGCGTGCTTCTTCACGTCATTGGCGACGCGATTAACAACGTGGGCGTCATCATCTCTGCGTTAG TCATCTGGTTGGCCCATTATGACGGGAAATACTACGCAGATCCTGGAGTCAGCATGGGGATCGCGATGATGATCC TCATATCATCAATTCCCCTAGGTGAGCCAAGAAAATCCATCCTTTAACAAAGCTAATGCTCGTTTTCCTGAAAAG TCAAAAGATCCGGCTCCATTCTTCTTGAAAGCGTACCTCCTGGGATTGACCTGAGAGACATAAAGCACGATTTGG AAAAGGTTAGTCGGCCTTAA |