© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g9473.t1 |
| Gene name | |
| Location | scaffold_087:8619..9616 |
| Strand | + |
| Gene length (bp) | 997 |
| Transcript length (bp) | 861 |
| Coding sequence length (bp) | 861 |
| Protein length (aa) | 287 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01758 | SBF | Sodium Bile acid symporter family | 5.3E-47 | 1 | 187 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 26 | 48 | 22 |
| 2 | 58 | 80 | 22 |
| 3 | 89 | 111 | 22 |
| 4 | 126 | 145 | 19 |
| 5 | 157 | 179 | 22 |
| 6 | 199 | 221 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g9473.t1 MYPILCKVRFESLHQVFKTRQIWIQIAFSIVVNWIIAPFFMLALSWAFLPDEPELRQGLILVGLARCIAMVLIWT GLAGGDSEYCAILVAVNSLLQMVLFAPMGVFFIQVISGDSIAFQYSTAAKSVAVFLGIPLGAAILTRFTLRWATS PRWYDEVFLKWASPWSLIGLLFTILVLFASQGRHVVHQIVSVIRVAAPLIVYFAVIFLLTLLVTYKLGFGYKLAV TQSFTAASNNFELAIAVAVATFGADSNQALASTVGPLIEVPVLLGLVYAVKSIAKGLNWKD* |
| Coding | >Ani_SJS100_1|g9473.t1 ATGTATCCCATTCTCTGCAAAGTGCGCTTTGAGAGTTTGCATCAGGTCTTCAAAACCCGTCAGATATGGATTCAG ATTGCGTTCAGTATCGTTGTTAACTGGATCATTGCCCCGTTTTTCATGTTGGCGTTATCCTGGGCTTTCCTTCCA GACGAACCGGAGCTACGCCAGGGGTTGATTCTGGTCGGACTAGCACGATGCATCGCTATGGTTCTGATCTGGACC GGTCTGGCAGGCGGCGACAGCGAATACTGCGCCATCCTCGTCGCCGTGAACTCCCTCCTGCAAATGGTGCTATTC GCACCCATGGGCGTCTTTTTCATCCAAGTCATCAGCGGCGATAGCATAGCCTTTCAATATTCCACCGCCGCGAAA AGCGTCGCCGTCTTCCTCGGCATTCCGCTGGGCGCAGCAATCCTCACGCGCTTCACTCTCCGCTGGGCGACAAGT CCGCGATGGTATGATGAGGTCTTTCTGAAATGGGCAAGCCCCTGGTCTCTCATTGGGCTTTTGTTCACGATATTG GTGCTGTTCGCGTCTCAGGGTCGTCACGTTGTTCATCAGATTGTCTCTGTGATCCGGGTGGCCGCGCCGCTGATT GTTTATTTCGCGGTTATATTCCTCTTGACGTTGTTGGTTACGTACAAGTTGGGATTTGGGTATAAGCTCGCGGTG ACGCAAAGTTTTACCGCTGCTAGTAATAATTTCGAGTTGGCGATTGCCGTTGCTGTTGCTACGTTTGGGGCAGAC AGTAATCAGGCACTTGCTTCGACTGTTGGGCCACTGATTGAGGTACCGGTTTTGTTAGGGCTTGTCTATGCTGTT AAATCTATAGCGAAGGGACTGAACTGGAAGGATTAG |
| Transcript | >Ani_SJS100_1|g9473.t1 ATGTATCCCATTCTCTGCAAAGTGCGCTTTGAGAGTTTGCATCAGGTCTTCAAAACCCGTCAGATATGGATTCAG ATTGCGTTCAGTATCGTTGTTAACTGGATCATTGCCCCGTTTTTCATGTTGGCGTTATCCTGGGCTTTCCTTCCA GACGAACCGGAGCTACGCCAGGGGTTGATTCTGGTCGGACTAGCACGATGCATCGCTATGGTTCTGATCTGGACC GGTCTGGCAGGCGGCGACAGCGAATACTGCGCCATCCTCGTCGCCGTGAACTCCCTCCTGCAAATGGTGCTATTC GCACCCATGGGCGTCTTTTTCATCCAAGTCATCAGCGGCGATAGCATAGCCTTTCAATATTCCACCGCCGCGAAA AGCGTCGCCGTCTTCCTCGGCATTCCGCTGGGCGCAGCAATCCTCACGCGCTTCACTCTCCGCTGGGCGACAAGT CCGCGATGGTATGATGAGGTCTTTCTGAAATGGGCAAGCCCCTGGTCTCTCATTGGGCTTTTGTTCACGATATTG GTGCTGTTCGCGTCTCAGGGTCGTCACGTTGTTCATCAGATTGTCTCTGTGATCCGGGTGGCCGCGCCGCTGATT GTTTATTTCGCGGTTATATTCCTCTTGACGTTGTTGGTTACGTACAAGTTGGGATTTGGGTATAAGCTCGCGGTG ACGCAAAGTTTTACCGCTGCTAGTAATAATTTCGAGTTGGCGATTGCCGTTGCTGTTGCTACGTTTGGGGCAGAC AGTAATCAGGCACTTGCTTCGACTGTTGGGCCACTGATTGAGGTACCGGTTTTGTTAGGGCTTGTCTATGCTGTT AAATCTATAGCGAAGGGACTGAACTGGAAGGATTAG |
| Gene | >Ani_SJS100_1|g9473.t1 ATGTATCCCATTCTCTGCAAAGTGCGCTTTGAGAGTTTGCATCAGGTCTTCAAAACCCGTCAGATATGGATTCAG ATTGCGTTCAGTATCGTTGTTAACTGGATCATTGCCCCGTTTTTCATGGTAAGCCTCCGAGTTTCCCACTACCTC TCTAAATCAGAAATTGACACGAAATATTCTAGTTGGCGTTATCCTGGGCTTTCCTTCCAGACGAACCGGAGCTAC GCCAGGGGTTGATTCTGGTCGGACTAGCACGATGCATCGCTATGGTAGAAAAACCCCCTCCCCAACAGCTGTTGG GGGTGAAACGTTATTTTCGTACTCAACGATACTAACAAACACTCAGGTTCTGATCTGGACCGGTCTGGCAGGCGG CGACAGCGAATACTGCGCCATCCTCGTCGCCGTGAACTCCCTCCTGCAAATGGTGCTATTCGCACCCATGGGCGT CTTTTTCATCCAAGTCATCAGCGGCGATAGCATAGCCTTTCAATATTCCACCGCCGCGAAAAGCGTCGCCGTCTT CCTCGGCATTCCGCTGGGCGCAGCAATCCTCACGCGCTTCACTCTCCGCTGGGCGACAAGTCCGCGATGGTATGA TGAGGTCTTTCTGAAATGGGCAAGCCCCTGGTCTCTCATTGGGCTTTTGTTCACGATATTGGTGCTGTTCGCGTC TCAGGGTCGTCACGTTGTTCATCAGATTGTCTCTGTGATCCGGGTGGCCGCGCCGCTGATTGTTTATTTCGCGGT TATATTCCTCTTGACGTTGTTGGTTACGTACAAGTTGGGATTTGGGTATAAGCTCGCGGTGACGCAAAGTTTTAC CGCTGCTAGTAATAATTTCGAGTTGGCGATTGCCGTTGCTGTTGCTACGTTTGGGGCAGACAGTAATCAGGCACT TGCTTCGACTGTTGGGCCACTGATTGAGGTACCGGTTTTGTTAGGGCTTGTCTATGCTGTTAAATCTATAGCGAA GGGACTGAACTGGAAGGATTAG |