Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g9414.t1
Gene name
Locationscaffold_085:97269..98006
Strand-
Gene length (bp)737
Transcript length (bp)465
Coding sequence length (bp)465
Protein length (aa) 155

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02466 Tim17 Tim17/Tim22/Tim23/Pmp24 family 4.4E-33 13 120

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 36 0.5

Transmembrane Domains

Domain # Start End Length
1 10 32 22
2 45 67 22
3 87 106 19
4 113 135 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g9414.t1
MDHSRDPCPWVALSDFGGAFCMGAIGGAVWHGVKGFRNSPYGERRIGAITAIKARAPVLGGNFGVWGGMFSTFDC
AIKGIRKKEDPYNAIIAGFFTGGALAVRGGVKAARNSAIMCAVFLAVIEGVGIGFQRMMADNTKLELPPAPPSGD
KAVA*
Coding >Ani_SJS100_1|g9414.t1
ATGGATCACTCCAGAGATCCCTGCCCCTGGGTTGCTCTTAGCGACTTCGGTGGTGCTTTCTGCATGGGTGCAATT
GGTGGTGCTGTCTGGCACGGTGTGAAGGGTTTCAGAAACAGCCCCTACGGAGAGCGCCGGATAGGTGCCATCACA
GCCATCAAGGCTCGTGCGCCTGTTCTCGGTGGTAACTTCGGTGTTTGGGGTGGTATGTTCTCGACGTTCGACTGT
GCGATCAAGGGTATCAGAAAGAAGGAAGATCCTTACAATGCTATCATTGCTGGTTTCTTCACTGGTGGTGCTTTG
GCCGTTCGTGGTGGTGTTAAGGCTGCCAGAAACTCCGCTATCATGTGCGCTGTCTTCCTGGCTGTCATTGAGGGT
GTCGGTATCGGTTTCCAGAGAATGATGGCCGACAACACAAAACTAGAGCTTCCTCCTGCCCCTCCGTCCGGCGAC
AAGGCCGTCGCTTAA
Transcript >Ani_SJS100_1|g9414.t1
ATGGATCACTCCAGAGATCCCTGCCCCTGGGTTGCTCTTAGCGACTTCGGTGGTGCTTTCTGCATGGGTGCAATT
GGTGGTGCTGTCTGGCACGGTGTGAAGGGTTTCAGAAACAGCCCCTACGGAGAGCGCCGGATAGGTGCCATCACA
GCCATCAAGGCTCGTGCGCCTGTTCTCGGTGGTAACTTCGGTGTTTGGGGTGGTATGTTCTCGACGTTCGACTGT
GCGATCAAGGGTATCAGAAAGAAGGAAGATCCTTACAATGCTATCATTGCTGGTTTCTTCACTGGTGGTGCTTTG
GCCGTTCGTGGTGGTGTTAAGGCTGCCAGAAACTCCGCTATCATGTGCGCTGTCTTCCTGGCTGTCATTGAGGGT
GTCGGTATCGGTTTCCAGAGAATGATGGCCGACAACACAAAACTAGAGCTTCCTCCTGCCCCTCCGTCCGGCGAC
AAGGCCGTCGCTTAA
Gene >Ani_SJS100_1|g9414.t1
ATGGATCACTCCAGAGATCCCTGCCCCTGGGTTGCTCTTAGCGACTTCGGTGGTGCTTTCTGCATGGGTGTACGT
CACTGGTTCTAGCAATCGATTGTGCTTGTTACCAATGGGTCAAAACTAAACATATGTTGTGTCTATAGGCAATTG
GTGGTGCTGTCTGGCACGGTGTGAAGGGTTTCAGAAACAGCCCCTACGGAGAGCGCCGGATAGGTGCCATCACAG
CCATCAAGGCTCGTGCGCCTGTTCTCGGTGGTAACTTCGGTGTTTGGGGTGGTATGTTCTCGACGTTCGACTGTG
CGATCAAGGGTATCAGAAAGAAGGAAGATCCTTACAATGCTAGTATGTTTCCCGGTCAATCCGTGAGGGATTGCT
ATCTTGTTTCTATGCGCTTTGAGATTGGGTGTCATAGCTAACGATTCACACTTTGCAGTCATTGCTGGTTTCTTC
ACTGGTGGTGCTTTGGCCGTTCGTGGTGGTGTTAAGGCTGCCAGAAACTCCGCTATCATGTGCGCTGTCTTCCTG
GCTGTCATTGAGGGTGTCGGTATCGGTTTCCAGAGAATGATGGCCGACAACACAAAACTAGAGGTGAGATCATAT
CCCACATTCGTCTCTGATGTCGTGTGGCCACTCGACCTGCAAAGGCTACACCTCATTGCTGAAGCTTATTGAGTA
CTGACTTGCCACTACTTTAGCTTCCTCCTGCCCCTCCGTCCGGCGACAAGGCCGTCGCTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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